Fwd: 'UsesFormDefinitions' is not defined
Hi, yesterday I updated Galaxy to the latest revision and now it is not possible to access any Data Libraries or to create a new one. Galaxy shows me a read box with following error message: *Error attempting to display contents of library (100326_HWUSI-EAS632R_0002): name 'UsesFormDefinitions' is not defined.* The log file message is: *"GET /galaxy/library_common/browse_library?sort=name&webapp=galaxy&f-description=All&f-name=All&page=1&cntrller=library&show_item_checkboxes=false&async=false&operation=browse&id=9d04ee723dc2cac7 HTTP/1.1" 302 - " http://x.x.x.x/galaxy/library/browse_libraries?status=error&use_panels=False&message=Error+attempting+to+display+contents+of+library+%100326_HWUSI-EAS632R_0002%29%3A+name+__sq__UsesFormDefinitions__sq__+is+not+defined." "Mozilla/5.0 (X11; Linux x86_64) * Any ideas how to solve this problem or were to start troubleshooting? Thank you in advance Alex
Hi Alex I am in the same situation, updating our galaxy servers to the "Oct 5th" release (changeset: 7824:b5bda7a5c345), and I have encountered the same problem. I guess, there are actually two problems: First problem - this happens with a fresh install: ================================================== I can't create a library at all, I get the following error message: Error attempting to display contents of library (foo): No module named controllers.library_common. There have been a few commits on "library_common.py" over the last few days, which might solve this problem.....? Second problem - this happens after upgrading an existing installation ====================================================================== Like the situation you reported earlier this morning, I get: Error attempting to display contents of library (haruhotz): name 'UsesFormDefinitions' is not defined. I manage to track down the problem to the fact that in the old version, we've had ~/lib/galaxy/web/controllers/ which apparently has been replaced by ~/lib/galaxy/webapps/galaxy/controllers/ if I remove ~/lib/galaxy/web/controllers/ I get a new error: Error attempting to display contents of library (haruhotz): No module named library_common. which is very similar to the error you get with a fresh install Obviously, old stuff (ie ~/lib/galaxy/web/controllers/) is still used after the upgrade. Sorry, no solution yet, but maybe it helps the developers to track down the problem and help us getting the servers running again. Regards Hans-Rudolf On 10/18/2012 10:48 AM, Alexander Graf wrote:
Hi, yesterday I updated Galaxy to the latest revision and now it is not possible to access any Data Libraries or to create a new one. Galaxy shows me a read box with following error message:
*Error attempting to display contents of library (100326_HWUSI-EAS632R_0002): name 'UsesFormDefinitions' is not defined.*
The log file message is:
/"GET /galaxy/library_common/browse_library?sort=name&webapp=galaxy&f-description=All&f-name=All&page=1&cntrller=library&show_item_checkboxes=false&async=false&operation=browse&id=9d04ee723dc2cac7 HTTP/1.1" 302 - "http://x.x.x.x/galaxy/library/browse_libraries?status=error&use_panels=False&message=Error+attempting+to+display+contents+of+library+%100326_HWUSI-EAS632R_0002%29%3A+name+__sq__UsesFormDefinitions__sq__+is+not+defined." "Mozilla/5.0 (X11; Linux x86_64) /
Any ideas how to solve this problem or were to start troubleshooting?
Thank you in advance
Alex
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This was fixed in galaxy-central last week and should be part of galaxy-dist. What happened is that controllers were migrated and a couple of modules were left out. See changeset 210c39f4bf7f or later, which I believe was fixed on October 4th. In particular, the problem you're seeing had to do with the templates/library/common/library_common.mako pointing to galaxy.web.controllers.library_common instead of galaxy.webapps.galaxy.controllers.library_common. A few other files had also been affected. -Scott ----- Original Message -----
Hi Alex
I am in the same situation, updating our galaxy servers to the "Oct 5th" release (changeset: 7824:b5bda7a5c345), and I have encountered the same problem. I guess, there are actually two problems:
First problem - this happens with a fresh install: ==================================================
I can't create a library at all, I get the following error message:
Error attempting to display contents of library (foo): No module named controllers.library_common.
There have been a few commits on "library_common.py" over the last few days, which might solve this problem.....?
Second problem - this happens after upgrading an existing installation ======================================================================
Like the situation you reported earlier this morning, I get:
Error attempting to display contents of library (haruhotz): name 'UsesFormDefinitions' is not defined.
I manage to track down the problem to the fact that
in the old version, we've had
~/lib/galaxy/web/controllers/
which apparently has been replaced by
~/lib/galaxy/webapps/galaxy/controllers/
if I remove ~/lib/galaxy/web/controllers/
I get a new error:
Error attempting to display contents of library (haruhotz): No module named library_common.
which is very similar to the error you get with a fresh install
Obviously, old stuff (ie ~/lib/galaxy/web/controllers/) is still used after the upgrade.
Sorry, no solution yet, but maybe it helps the developers to track down the problem and help us getting the servers running again.
Regards Hans-Rudolf
On 10/18/2012 10:48 AM, Alexander Graf wrote:
Hi, yesterday I updated Galaxy to the latest revision and now it is not possible to access any Data Libraries or to create a new one. Galaxy shows me a read box with following error message:
*Error attempting to display contents of library (100326_HWUSI-EAS632R_0002): name 'UsesFormDefinitions' is not defined.*
The log file message is:
/"GET /galaxy/library_common/browse_library?sort=name&webapp=galaxy&f-description=All&f-name=All&page=1&cntrller=library&show_item_checkboxes=false&async=false&operation=browse&id=9d04ee723dc2cac7 HTTP/1.1" 302 - "http://x.x.x.x/galaxy/library/browse_libraries?status=error&use_panels=False&message=Error+attempting+to+display+contents+of+library+%100326_HWUSI-EAS632R_0002%29%3A+name+__sq__UsesFormDefinitions__sq__+is+not+defined." "Mozilla/5.0 (X11; Linux x86_64) /
Any ideas how to solve this problem or were to start troubleshooting?
Thank you in advance
Alex
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Excuse me - I meant to say that this will part of the upcoming galaxy-dist. -Scott ----- Original Message -----
This was fixed in galaxy-central last week and should be part of galaxy-dist. What happened is that controllers were migrated and a couple of modules were left out. See changeset 210c39f4bf7f or later, which I believe was fixed on October 4th.
In particular, the problem you're seeing had to do with the templates/library/common/library_common.mako pointing to galaxy.web.controllers.library_common instead of galaxy.webapps.galaxy.controllers.library_common. A few other files had also been affected.
-Scott
----- Original Message -----
Hi Alex
I am in the same situation, updating our galaxy servers to the "Oct 5th" release (changeset: 7824:b5bda7a5c345), and I have encountered the same problem. I guess, there are actually two problems:
First problem - this happens with a fresh install: ==================================================
I can't create a library at all, I get the following error message:
Error attempting to display contents of library (foo): No module named controllers.library_common.
There have been a few commits on "library_common.py" over the last few days, which might solve this problem.....?
Second problem - this happens after upgrading an existing installation ======================================================================
Like the situation you reported earlier this morning, I get:
Error attempting to display contents of library (haruhotz): name 'UsesFormDefinitions' is not defined.
I manage to track down the problem to the fact that
in the old version, we've had
~/lib/galaxy/web/controllers/
which apparently has been replaced by
~/lib/galaxy/webapps/galaxy/controllers/
if I remove ~/lib/galaxy/web/controllers/
I get a new error:
Error attempting to display contents of library (haruhotz): No module named library_common.
which is very similar to the error you get with a fresh install
Obviously, old stuff (ie ~/lib/galaxy/web/controllers/) is still used after the upgrade.
Sorry, no solution yet, but maybe it helps the developers to track down the problem and help us getting the servers running again.
Regards Hans-Rudolf
On 10/18/2012 10:48 AM, Alexander Graf wrote:
Hi, yesterday I updated Galaxy to the latest revision and now it is not possible to access any Data Libraries or to create a new one. Galaxy shows me a read box with following error message:
*Error attempting to display contents of library (100326_HWUSI-EAS632R_0002): name 'UsesFormDefinitions' is not defined.*
The log file message is:
/"GET /galaxy/library_common/browse_library?sort=name&webapp=galaxy&f-description=All&f-name=All&page=1&cntrller=library&show_item_checkboxes=false&async=false&operation=browse&id=9d04ee723dc2cac7 HTTP/1.1" 302 - "http://x.x.x.x/galaxy/library/browse_libraries?status=error&use_panels=False&message=Error+attempting+to+display+contents+of+library+%100326_HWUSI-EAS632R_0002%29%3A+name+__sq__UsesFormDefinitions__sq__+is+not+defined." "Mozilla/5.0 (X11; Linux x86_64) /
Any ideas how to solve this problem or were to start troubleshooting?
Thank you in advance
Alex
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Hi Scott Thank you very much for your quick reply! after fixing (ie replacing "galaxy.web.controllers.library_common" with "galaxy.webapps.galaxy.controllers.library_common") in the following four files: ~/templates/library/common/library_dataset_search_results.mako ldda_info.mako browse_library_opt.mako browse_library.mako it works! - both on the fresh install and the upgraded server @Alex: I hope this solves your problem as well. Regards Hans-Rudolf Than On 10/18/2012 06:12 PM, Scott McManus wrote:
This was fixed in galaxy-central last week and should be part of galaxy-dist. What happened is that controllers were migrated and a couple of modules were left out. See changeset 210c39f4bf7f or later, which I believe was fixed on October 4th.
In particular, the problem you're seeing had to do with the templates/library/common/library_common.mako pointing to galaxy.web.controllers.library_common instead of galaxy.webapps.galaxy.controllers.library_common. A few other files had also been affected.
-Scott
----- Original Message -----
Hi Alex
I am in the same situation, updating our galaxy servers to the "Oct 5th" release (changeset: 7824:b5bda7a5c345), and I have encountered the same problem. I guess, there are actually two problems:
First problem - this happens with a fresh install: ==================================================
I can't create a library at all, I get the following error message:
Error attempting to display contents of library (foo): No module named controllers.library_common.
There have been a few commits on "library_common.py" over the last few days, which might solve this problem.....?
Second problem - this happens after upgrading an existing installation ======================================================================
Like the situation you reported earlier this morning, I get:
Error attempting to display contents of library (haruhotz): name 'UsesFormDefinitions' is not defined.
I manage to track down the problem to the fact that
in the old version, we've had
~/lib/galaxy/web/controllers/
which apparently has been replaced by
~/lib/galaxy/webapps/galaxy/controllers/
if I remove ~/lib/galaxy/web/controllers/
I get a new error:
Error attempting to display contents of library (haruhotz): No module named library_common.
which is very similar to the error you get with a fresh install
Obviously, old stuff (ie ~/lib/galaxy/web/controllers/) is still used after the upgrade.
Sorry, no solution yet, but maybe it helps the developers to track down the problem and help us getting the servers running again.
Regards Hans-Rudolf
On 10/18/2012 10:48 AM, Alexander Graf wrote:
Hi, yesterday I updated Galaxy to the latest revision and now it is not possible to access any Data Libraries or to create a new one. Galaxy shows me a read box with following error message:
*Error attempting to display contents of library (100326_HWUSI-EAS632R_0002): name 'UsesFormDefinitions' is not defined.*
The log file message is:
/"GET /galaxy/library_common/browse_library?sort=name&webapp=galaxy&f-description=All&f-name=All&page=1&cntrller=library&show_item_checkboxes=false&async=false&operation=browse&id=9d04ee723dc2cac7 HTTP/1.1" 302 - "http://x.x.x.x/galaxy/library/browse_libraries?status=error&use_panels=False&message=Error+attempting+to+display+contents+of+library+%100326_HWUSI-EAS632R_0002%29%3A+name+__sq__UsesFormDefinitions__sq__+is+not+defined." "Mozilla/5.0 (X11; Linux x86_64) /
Any ideas how to solve this problem or were to start troubleshooting?
Thank you in advance
Alex
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Hi Scott and Hans-Rudolf, thank you both for your efforts. The fix works perfectly. Alex 2012/10/18 Hans-Rudolf Hotz <hrh@fmi.ch>
Hi Scott
Thank you very much for your quick reply!
after fixing (ie replacing "galaxy.web.controllers.**library_common" with "galaxy.webapps.galaxy.**controllers.library_common") in the following four files:
~/templates/library/common/**library_dataset_search_**results.mako ldda_info.mako browse_library_opt.mako browse_library.mako
it works! - both on the fresh install and the upgraded server
@Alex: I hope this solves your problem as well.
Regards Hans-Rudolf
Than
On 10/18/2012 06:12 PM, Scott McManus wrote:
This was fixed in galaxy-central last week and should be part of galaxy-dist. What happened is that controllers were migrated and a couple of modules were left out. See changeset 210c39f4bf7f or later, which I believe was fixed on October 4th.
In particular, the problem you're seeing had to do with the templates/library/common/**library_common.mako pointing to galaxy.web.controllers.**library_common instead of galaxy.webapps.galaxy.**controllers.library_common. A few other files had also been affected.
-Scott
----- Original Message -----
Hi Alex
I am in the same situation, updating our galaxy servers to the "Oct 5th" release (changeset: 7824:b5bda7a5c345), and I have encountered the same problem. I guess, there are actually two problems:
First problem - this happens with a fresh install: ==============================**====================
I can't create a library at all, I get the following error message:
Error attempting to display contents of library (foo): No module named controllers.library_common.
There have been a few commits on "library_common.py" over the last few days, which might solve this problem.....?
Second problem - this happens after upgrading an existing installation ==============================**==============================** ==========
Like the situation you reported earlier this morning, I get:
Error attempting to display contents of library (haruhotz): name 'UsesFormDefinitions' is not defined.
I manage to track down the problem to the fact that
in the old version, we've had
~/lib/galaxy/web/controllers/
which apparently has been replaced by
~/lib/galaxy/webapps/galaxy/**controllers/
if I remove ~/lib/galaxy/web/controllers/
I get a new error:
Error attempting to display contents of library (haruhotz): No module named library_common.
which is very similar to the error you get with a fresh install
Obviously, old stuff (ie ~/lib/galaxy/web/controllers/) is still used after the upgrade.
Sorry, no solution yet, but maybe it helps the developers to track down the problem and help us getting the servers running again.
Regards Hans-Rudolf
On 10/18/2012 10:48 AM, Alexander Graf wrote:
Hi, yesterday I updated Galaxy to the latest revision and now it is not possible to access any Data Libraries or to create a new one. Galaxy shows me a read box with following error message:
*Error attempting to display contents of library (100326_HWUSI-EAS632R_0002): name 'UsesFormDefinitions' is not defined.*
The log file message is:
/"GET /galaxy/library_common/browse_**library?sort=name&webapp=** galaxy&f-description=All&f-**name=All&page=1&cntrller=** library&show_item_checkboxes=**false&async=false&operation=** browse&id=9d04ee723dc2cac7 HTTP/1.1" 302 - "http://x.x.x.x/galaxy/**library/browse_libraries?** status=error&use_panels=False&**message=Error+attempting+to+** display+contents+of+library+%**100326_HWUSI-EAS632R_0002%29%** 3A+name+__sq__**UsesFormDefinitions__sq__+is+**not+defined<http://x.x.x.x/galaxy/library/browse_libraries?status=error&use_panels=False&message=Error+attempting+to+display+contents+of+library+%100326_HWUSI-EAS632R_0002%29%3A+name+__sq__UsesFormDefinitions__sq__+is+not+defined> ." "Mozilla/5.0 (X11; Linux x86_64) /
Any ideas how to solve this problem or were to start troubleshooting?
Thank you in advance
Alex
______________________________**_____________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
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participants (4)
-
Alexander Graf -
Alexander Graf -
Hans-Rudolf Hotz -
Scott McManus