Dear Admin,
Since the upgrade, I lost the samtools that I installed myself. Although it
is still in the tool_conf.xml, it does not show up on the panel. I tried to
install from toolshed, but failed. Error messages pasted below. Could
someone take a look?
Thanks,
Rui
⇝ AttributeError: 'NoneType' object has no attribute 'strip'
URL:
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
Module weberror.evalexception.middleware:*364* in respond
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
view
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
>
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
app_iter *=* self*.*application*(*environ*,* detect_start_response*)*
Module paste.recursive:*84* in __call__
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
view
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
>
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
*return* self*.*application*(*environ*,* start_response*)*
Module paste.httpexceptions:*633* in __call__
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
view
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
>
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
*return* self*.*application*(*environ*,* start_response*)*
Module galaxy.web.framework.base:*132* in __call__
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
view
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
>
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
*return* self*.*handle_request*(* environ*,* start_response *)*
Module galaxy.web.framework.base:*190* in handle_request
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
view
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
>
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
body *=* method*(* trans*,* ****kwargs *)*
Module galaxy.web.framework:*369* in decorator
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
view
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
>
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
*return* func*(* self*,* trans*,* ***args*,* ****kwargs *)*
Module galaxy.webapps.galaxy.controllers.admin_toolshed:*983* in
prepare_for_install
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
view
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
>
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
includes_tool_dependencies *)*
Module tool_shed.util.common_install_util:*97* in
get_dependencies_for_repository
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
view
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
>
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
repository *=* suc*.*get_repository_for_dependency_relationship*(* trans*.*
app*,* tool_shed_url*,* name*,*repository_owner*,* changeset_revision *)*
Module tool_shed.util.shed_util_common:*1036* in
get_repository_for_dependency_relationship
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
view
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
>
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
*(* name*,* owner*,* changeset_revision *)* *)*
Module tool_shed.util.shed_util_common:*1867* in url_join
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
view
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
>
<
http://128.125.28.215/admin_toolshed/prepare_for_install?tool_shed_url=ht...
parts*.*append*(* arg*.*strip*(* '/' *)* *)*
*AttributeError: 'NoneType' object has no attribute 'strip'*