Re: [galaxy-dev] [galaxy-user] Local Install - Understanding Upload File Concept
On Nov 16, 2012, at 12:42 PM, greg wrote:
On Fri, Nov 16, 2012 at 12:28 PM, Nate Coraor <nate@bx.psu.edu> wrote:
If you follow the log, you should see messages from galaxy.jobs, and specifically, galaxy.jobs.runners.drmaa.
No, I don't see anything like that in the log after I started the upload. Any ideas on how to see what might be going wrong there?
Could you provide the contents of the log from the time you click the execute button on the tool form until it turns red in the UI? I just noticed this thread was on the user list, so I've moved it over to the dev list. --nate
-Greg
I only see HTTP messages. I haven't seen another error, I now just see the upload job not ever ending. (I'll be away next week so we might have to pick up on this when I'm back, if you don't hear from me) 10.101.10.34 - - [16/Nov/2012:14:36:46 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:50 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:54 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:55 -0400] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://galaxy/root/tool_menu" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:58 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:02 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:06 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://galaxy/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://galaxy/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /history HTTP/1.1" 200 - "http://galaxy/tool_runner/upload_async_message" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST /root/user_get_usage HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:12 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:16 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:20 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:24 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:28 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:32 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:37 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:41 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:45 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:49 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:53 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:57 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:01 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:05 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:09 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:13 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:17 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:21 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:25 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:29 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:33 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:37 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:41 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:45 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:49 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:53 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" On Fri, Nov 16, 2012 at 2:27 PM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 12:42 PM, greg wrote:
On Fri, Nov 16, 2012 at 12:28 PM, Nate Coraor <nate@bx.psu.edu> wrote:
If you follow the log, you should see messages from galaxy.jobs, and specifically, galaxy.jobs.runners.drmaa.
No, I don't see anything like that in the log after I started the upload. Any ideas on how to see what might be going wrong there?
Could you provide the contents of the log from the time you click the execute button on the tool form until it turns red in the UI?
I just noticed this thread was on the user list, so I've moved it over to the dev list.
--nate
-Greg
On Nov 16, 2012, at 2:40 PM, greg wrote:
I only see HTTP messages. I haven't seen another error, I now just see the upload job not ever ending.
Is there any possibility that you have more than one Galaxy server process running? The logs only show that an upload attempt was made, but no indication that a job ever ran. If you're getting all the way to a red dataset with output from the upload tool, there should be a lot more in the log. --nate
(I'll be away next week so we might have to pick up on this when I'm back, if you don't hear from me)
10.101.10.34 - - [16/Nov/2012:14:36:46 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:50 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:54 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:55 -0400] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://galaxy/root/tool_menu" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:58 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:02 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:06 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://galaxy/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://galaxy/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /history HTTP/1.1" 200 - "http://galaxy/tool_runner/upload_async_message" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST /root/user_get_usage HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:12 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:16 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:20 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:24 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:28 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:32 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:37 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:41 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:45 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:49 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:53 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:57 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:01 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:05 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:09 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:13 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:17 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:21 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:25 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:29 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:33 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:37 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:41 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:45 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:49 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:53 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
On Fri, Nov 16, 2012 at 2:27 PM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 12:42 PM, greg wrote:
On Fri, Nov 16, 2012 at 12:28 PM, Nate Coraor <nate@bx.psu.edu> wrote:
If you follow the log, you should see messages from galaxy.jobs, and specifically, galaxy.jobs.runners.drmaa.
No, I don't see anything like that in the log after I started the upload. Any ideas on how to see what might be going wrong there?
Could you provide the contents of the log from the time you click the execute button on the tool form until it turns red in the UI?
I just noticed this thread was on the user list, so I've moved it over to the dev list.
--nate
-Greg
I'm not getting the red dataset after I changed the new_file_path and restarted the galaxy service. Now when I upload it just says "Dataset is uploading" forever. It seems like it's not trying to launch a job, right? -Greg On Fri, Nov 16, 2012 at 2:45 PM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 2:40 PM, greg wrote:
I only see HTTP messages. I haven't seen another error, I now just see the upload job not ever ending.
Is there any possibility that you have more than one Galaxy server process running? The logs only show that an upload attempt was made, but no indication that a job ever ran. If you're getting all the way to a red dataset with output from the upload tool, there should be a lot more in the log.
--nate
(I'll be away next week so we might have to pick up on this when I'm back, if you don't hear from me)
10.101.10.34 - - [16/Nov/2012:14:36:46 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:50 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:54 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:55 -0400] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://galaxy/root/tool_menu" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:58 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:02 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:06 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://galaxy/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://galaxy/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /history HTTP/1.1" 200 - "http://galaxy/tool_runner/upload_async_message" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST /root/user_get_usage HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:12 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:16 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:20 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:24 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:28 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:32 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:37 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:41 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:45 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:49 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:53 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:57 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:01 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:05 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:09 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:13 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:17 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:21 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:25 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:29 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:33 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:37 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:41 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:45 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:49 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:53 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
On Fri, Nov 16, 2012 at 2:27 PM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 12:42 PM, greg wrote:
On Fri, Nov 16, 2012 at 12:28 PM, Nate Coraor <nate@bx.psu.edu> wrote:
If you follow the log, you should see messages from galaxy.jobs, and specifically, galaxy.jobs.runners.drmaa.
No, I don't see anything like that in the log after I started the upload. Any ideas on how to see what might be going wrong there?
Could you provide the contents of the log from the time you click the execute button on the tool form until it turns red in the UI?
I just noticed this thread was on the user list, so I've moved it over to the dev list.
--nate
-Greg
On Nov 16, 2012, at 2:50 PM, greg wrote:
I'm not getting the red dataset after I changed the new_file_path and restarted the galaxy service.
Now when I upload it just says "Dataset is uploading" forever.
It seems like it's not trying to launch a job, right?
That seems likely. I'd try again, in case the upload was interrupted. --nate
-Greg
On Fri, Nov 16, 2012 at 2:45 PM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 2:40 PM, greg wrote:
I only see HTTP messages. I haven't seen another error, I now just see the upload job not ever ending.
Is there any possibility that you have more than one Galaxy server process running? The logs only show that an upload attempt was made, but no indication that a job ever ran. If you're getting all the way to a red dataset with output from the upload tool, there should be a lot more in the log.
--nate
(I'll be away next week so we might have to pick up on this when I'm back, if you don't hear from me)
10.101.10.34 - - [16/Nov/2012:14:36:46 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:50 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:54 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:55 -0400] "GET /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://galaxy/root/tool_menu" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:36:58 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:02 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:06 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST /tool_runner/upload_async_create HTTP/1.1" 200 - "http://galaxy/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /tool_runner/upload_async_message HTTP/1.1" 200 - "http://galaxy/" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "GET /history HTTP/1.1" 200 - "http://galaxy/tool_runner/upload_async_message" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:08 -0400] "POST /root/user_get_usage HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:12 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:16 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:20 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:24 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:28 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:32 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:37 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:41 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:45 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:49 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:53 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:37:57 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:01 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:05 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:09 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:13 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:17 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:21 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:25 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:29 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:33 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:37 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:41 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:45 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:49 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11" 10.101.10.34 - - [16/Nov/2012:14:38:53 -0400] "POST /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_0) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11"
On Fri, Nov 16, 2012 at 2:27 PM, Nate Coraor <nate@bx.psu.edu> wrote:
On Nov 16, 2012, at 12:42 PM, greg wrote:
On Fri, Nov 16, 2012 at 12:28 PM, Nate Coraor <nate@bx.psu.edu> wrote:
If you follow the log, you should see messages from galaxy.jobs, and specifically, galaxy.jobs.runners.drmaa.
No, I don't see anything like that in the log after I started the upload. Any ideas on how to see what might be going wrong there?
Could you provide the contents of the log from the time you click the execute button on the tool form until it turns red in the UI?
I just noticed this thread was on the user list, so I've moved it over to the dev list.
--nate
-Greg
participants (2)
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greg -
Nate Coraor