Thanks Bjorn, My visualization is here: https://github.com/gregvonkuster/galaxy-csg/tree/master/visualizations/csg, so can you provide your docker hack? In addition to including this into docker, I would like it to be available to Galaxy instances outside of docker. What is the general process for doing this? How does a Galaxy admin find out that this particular visualization exists and where to get it? Thanks! Greg Von Kuster

On Nov 30, 2015, at 11:06 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:

Hi Greg,

please have a look at:

https://github.com/bgruening/galaxytools/tree/master/visualisations

All these visualisations are self-contained. You can simply drag and drop them into the plugin folder and it will work. So no need for a PR.

I also have a hack for you to integrate this into a Docker flavour if you want to. Just put your Visualisation into github somewhere.

Cheers, Bjoern

...

Hello Galaxy-devs,

I’m preparing to contribute a Visualization plug-in to the Galaxy code via a PR, and I’m hoping someone can privide the details for how to prepare the Javascript files that will be included in the PR.

1) What is the process for compressing the Javascript files?

2) Looking at the code base, it seems that 3rd party Javascript libraries are kept in ~/static/scripts. Should all of the 3rd party libraries that are used by my plugin be added here as part of the PR?

Thanks very much,

Greg Von Kuster

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Thanks for the hint on how to make this available in the Docker flavor Bjorn! ;)

On Nov 30, 2015, at 12:14 PM, Björn Grüning <bjoern.gruening@gmail.com> wrote:

Hi Greg,

have a look here:

https://github.com/bgruening/galaxy-rna-workbench/blob/master/Dockerfile#L11

...

Thanks Bjorn,

My visualization is here: https://github.com/gregvonkuster/galaxy-csg/tree/master/visualizations/csg, so can you provide your docker hack?

In addition to including this into docker, I would like it to be available to Galaxy instances outside of docker. What is the general process for doing this? How does a Galaxy admin find out that this particular visualization exists and where to get it?

In the long run I would like to have the ToolShed providing visualisations. For the time being the best thing we can do is to join github repositories to have as less as possible. So the few repos out there get more attraction.

Cheers, Bjoern

...

Thanks!

Greg Von Kuster

...

On Nov 30, 2015, at 11:06 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:

Hi Greg,

please have a look at:

https://github.com/bgruening/galaxytools/tree/master/visualisations

All these visualisations are self-contained. You can simply drag and

...

drop them into the plugin folder and it will work. So no need for a PR.

I also have a hack for you to integrate this into a Docker flavour if you want to. Just put your Visualisation into github somewhere.

Cheers, Bjoern

...

Hello Galaxy-devs,

I’m preparing to contribute a Visualization plug-in to the Galaxy code via a PR, and I’m hoping someone can privide the details for how to prepare the Javascript files that will be included in the PR.

1) What is the process for compressing the Javascript files?

2) Looking at the code base, it seems that 3rd party Javascript libraries are kept in ~/static/scripts. Should all of the 3rd party libraries that are used by my plugin be added here as part of the PR?

Thanks very much,

Greg Von Kuster

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/

Thanks Eric, It seems to be the case currently that there is no way to easily share visualization plugins outside of using Docker, which is unfortunate. As an interim solution, would it work to allow visualization code to be added to the Galaxy code base via PRs? Otherwise, those that are not using Docker Galaxy flavors likey willl not locate the plugins that are necessary for the tools that can currently be installed from the Tool Shed. For example, all of these tools which are currently available in the Test Tool Shed and soon will be available in the Main Tool Shed require a plugin: https://testtoolshed.g2.bx.psu.edu/view/greg/icqsol_add_surface_field_from_e... https://testtoolshed.g2.bx.psu.edu/view/greg/icqsol_color_surface_field/6a5b... https://testtoolshed.g2.bx.psu.edu/view/greg/icqsol_compose_shapes/36f5fa5bd... https://testtoolshed.g2.bx.psu.edu/view/greg/icqsol_create_shape/d1d20666943... https://testtoolshed.g2.bx.psu.edu/view/greg/icqsol_refine_shape/a38daf377d5... Thanks again, Greg

On Nov 30, 2015, at 12:24 PM, Eric Rasche <esr@tamu.edu> wrote:

Hi Greg,

On 11/30/2015 10:06 AM, Björn Grüning wrote:

...

Hi Greg,

please have a look at:

https://github.com/bgruening/galaxytools/tree/master/visualisations

All these visualisations are self-contained. You can simply drag and drop them into the plugin folder and it will work. So no need for a PR.

Additionally I've opened an issue to track implementation of visualization repos in the TS https://github.com/galaxyproject/galaxy/issues/1191

Cheers, Eric

...

I also have a hack for you to integrate this into a Docker flavour if you want to. Just put your Visualisation into github somewhere.

Cheers, Bjoern

...

Hello Galaxy-devs,

I’m preparing to contribute a Visualization plug-in to the Galaxy code via a PR, and I’m hoping someone can privide the details for how to prepare the Javascript files that will be included in the PR.

1) What is the process for compressing the Javascript files?

2) Looking at the code base, it seems that 3rd party Javascript libraries are kept in ~/static/scripts. Should all of the 3rd party libraries that are used by my plugin be added here as part of the PR?

Thanks very much,

Greg Von Kuster

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

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-- Eric Rasche Programmer II

Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

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