Postgresql To Galaxy
Hi , i have created postgreSQL database where i have created all functions and views which performs annotations and some other functions , how can i show my postgresql database table to galaxyas output . i have connected my database from universe_wsgi.ini to my linux host where i am running galaxy and my database is on windows host, i need the python script which take values from table and show them back to galaxy. THANKS
On Feb 6, 2012, at 6:37 AM, Rehan Saleem wrote:
Hi , i have created postgreSQL database where i have created all functions and views which performs annotations and some other functions , how can i show my postgresql database table to galaxyas output . i have connected my database from universe_wsgi.ini to my linux host where i am running galaxy and my database is on windows host, i need the python script which take values from table and show them back to galaxy. THANKS
Hi Rehan, I am a little unsure what you're trying to do. Do you want to display contents of this database in some sort of display within Galaxy, use them as tool inputs, or outputs? I would not suggest using this custom database as Galaxy's database (set in database_connection) if it contains separate data from the Galaxy application. Galaxy should live in its own database away from any other tables you use for other purposes. --nate
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participants (2)
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Nate Coraor
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Rehan Saleem