At this time, these tools are still included within the main Galaxy distribution under
tools/gatk. I would recommend using the latest version available from galaxy-central until
they are migrated into the toolshed. Please let us know if you encounter any issues.
Thanks for using Galaxy,
On Apr 10, 2012, at 11:36 AM, Robert Chase wrote:
One of our users has been using the GATK (beta) tools on the main instance of galaxy and
would like to have them locally accessible. I have looked at the main toolshed but I
couldn't find them there. Is there a place I can download the GATK files and xml
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