Thanks Dannon for the help. Appreciate it.
On Fri, Dec 28, 2012 at 8:37 AM, Dannon Baker <dannonbaker(a)me.com> wrote:
Yes, there is a relationship - in the database there's also a
WorkflowStepConnection table that relates inputs and outputs (WorkflowStep
+ i/o name) between steps.
On Dec 28, 2012, at 8:33 AM, Sachit Adhikari <sachit.technerves(a)gmail.com>
> Hi Dannon,
> Thank you for your answer. What I meant by the last question is that:
> When I create a workflow (tophat-bowtie-bowtie2). The input is first
processed by tophat and the output of tophat is processed by bowtie and
then the output of bowtie and processed by bowtie2 and that's the final
output. There's some sort of relationship, right? Is this relationship
stored in database?
> On Fri, Dec 28, 2012 at 7:34 AM, Dannon Baker <dannonbaker(a)me.com>
> A workflow is just the definition of a particular process or set of
steps. This information is stored in the database (see Workflow,
StoredWorkflow, WorkflowStep tables). Running that workflow creates
datasets in a history (datasets which are stored in database/files).
> And, I'm not sure exactly what you're asking in your last question, can
> On Dec 28, 2012, at 2:16 AM, Sachit Adhikari <
> > I have searched the mailing list and found that the output, histories
and workflows are stored in ~/database/files. To do a little experiment I
deleted all the inside that directory. I then open my Galaxy and browse the
workflow. But the workflow is still there. I was wondering where is the
workflow stored in Galaxy? Also, if possible can I know how is the
relationship specified by user while creating workflow is stored?
> > Happy New year
> > Regards,
> > Sachit
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