Hi there
I'm trying to visualise some of our genome data using Trackster. Initial input is 790,000 lines of GFF3. When I try and create the visualisation, I get errors from two tools:
Convert GFF to Interval Index on data 3 -- an out of memory error - I'll try and fix this by upping the memory limit for our Galaxy jobs
Convert BED, GFF, or VCF to BigWig on data 3 -- bedtools and bedGraphToBigWig not found errors. I tried to resolve these by installing the ucsc-tools and bedtools packages - and they did install correctly - but I still get these file not found errors.
Any idea how to fix this second problem?
Thanks! Peter P.S. as an alternative to Trackster, does anyone have Galaxy interfaced to JBrowse?
galaxy-dev@lists.galaxyproject.org