Hello! I've a running instance of Galaxy that works just fine, thanks to Nate Coraor. I would like to add all the files that our centre produces, which is a lot, to the data library, and I would like to automate it. As I see it, there are 3 options: - add the data directly to the database (dataset, library, library_dataset...), but it "may not be" the best choice... - use the upload1 tool, but I need to first create a dataset (there is a dataset reference in the json configuration file isn't it?) - POST my "multiport/form-data" data to "/library_common/upload_library_dataset", but the library_id and folder_id are not the real ids and I haven't found out, yet, where they are coming from! I could really use a advice on which option is the best. Thank you in advance for your help! Best regards, Tanguy LE CARROUR -- Tanguy LE CARROUR Functional Genomics Center Zurich ETH Zurich / University of Zurich Winterthurerstrasse 190 8057 Zurich Switzerland
Tanguy Le Carrour wrote:
Hello!
I've a running instance of Galaxy that works just fine, thanks to Nate Coraor.
I would like to add all the files that our centre produces, which is a lot, to the data library, and I would like to automate it.
As I see it, there are 3 options: - add the data directly to the database (dataset, library, library_dataset...), but it "may not be" the best choice... - use the upload1 tool, but I need to first create a dataset (there is a dataset reference in the json configuration file isn't it?) - POST my "multiport/form-data" data to "/library_common/upload_library_dataset", but the library_id and folder_id are not the real ids and I haven't found out, yet, where they are coming from!
I could really use a advice on which option is the best. Thank you in advance for your help!
Hi Tanguy, This would be a great case for use of the (experimental) API. Set 'enable_api = True' in the config and then have a look at the README/scripts in scripts/api/ --nate
Best regards, Tanguy LE CARROUR
-- Tanguy LE CARROUR
Functional Genomics Center Zurich ETH Zurich / University of Zurich Winterthurerstrasse 190 8057 Zurich Switzerland
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