Fwd: Galaxy tool is not running
Hi Greg or James, This morning I got a question about the Aggregate Datapoints tool which only returned nan results. in line 204@ aggregate_scores_in_intervals.py<https://bitbucket.org/galaxy/galaxy-dist/src/95bf71620d50c6d81248eef2001a7dc156ae1088/tools/stats/aggregate_scores_in_intervals.py?at=default> I found out that the if not is NaN ( score ): should be if not isnan( score ): on https://usegalaxy.org/tool_runner?tool_id=aggregate_scores_in_intervals2 the tool also seems to be failing. I hope you could use this, Eric ---------- Forwarded message ---------- From: Sandra Gavaldá Martín Date: 26 January 2014 20:52< Subject: Galaxy tool is not running To: "Kuijt, Eric" <eric.kuijt@wur.nl> Hello Eric, My name is Sandra Gavaldá and I am very grateful for Galaxy tools. I usually use the one "Aggregate datapoints" for fusioning files with intervals and my .wig files. I noticed you made some updating and I do not why I can not obtain any result now. -- Central Veterinary Institute of Wageningen UR (CVI) Department of Infection Biology PO box 65, 8200 AB Lelystad, NL Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad Tel: +31-(0)320-293391 Fax: +31-(0)320-238153 E-mail: eric.kuijt@wur.nl Web: http://www.cvi.wur.nl
Hi Eric, Thanks for reporting this error, it has been resolved in changeset 12278:04bce95d8fd2 and 12281:6c5913a4b701. Please let us know if you encounter additional issues. Thanks for using Galaxy, Dan On Jan 27, 2014, at 4:56 AM, Eric Kuyt <eric.kuijt@wur.nl> wrote:
Hi Greg or James,
This morning I got a question about the Aggregate Datapoints tool which only returned nan results.
in line 204@aggregate_scores_in_intervals.py I found out that the
if not isNaN( score ): should be if not isnan( score ):
on https://usegalaxy.org/tool_runner?tool_id=aggregate_scores_in_intervals2 the tool also seems to be failing.
I hope you could use this,
Eric
---------- Forwarded message ---------- From: Sandra Gavaldá Martín Date: 26 January 2014 20:52< Subject: Galaxy tool is not running To: "Kuijt, Eric" <eric.kuijt@wur.nl>
Hello Eric,
My name is Sandra Gavaldá and I am very grateful for Galaxy tools. I usually use the one "Aggregate datapoints" for fusioning files with intervals and my .wig files. I noticed you made some updating and I do not why I can not obtain any result now.
-- Central Veterinary Institute of Wageningen UR (CVI) Department of Infection Biology PO box 65, 8200 AB Lelystad, NL Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad
Tel: +31-(0)320-293391 Fax: +31-(0)320-238153 E-mail: eric.kuijt@wur.nl Web: http://www.cvi.wur.nl <Screen Shot 2014-01-26 at 20.46.50.png><Screen Shot 2014-01-26 at 20.50.08.png>___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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participants (2)
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Daniel Blankenberg
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Eric Kuyt