Dear list, I'm looking for some inspiration for managing my galaxy instance (with ansible). In particular I'm looking for ansible roles to - setup quotas - manage the tool panel (I need to get order in the chaos) I'm wondering how the usegalaxy instances manage this? Is there some github that I could browse? Cheers, Matthias -- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------
Hi Matthias, nothing really fancy for usegalaxy.eu but we maintain this repo here: https://github.com/usegalaxy-eu/usegalaxy-eu-tools We have agreed on a set of labels and lint the tools against this white list. The tools are installed automatically with ephemeris. Quotas are managed manually to a large degree, as we do not have that many different once. Cheers, Bjoern Am 20.06.2018 um 15:54 schrieb Matthias Bernt:
Dear list,
I'm looking for some inspiration for managing my galaxy instance (with ansible). In particular I'm looking for ansible roles to - setup quotas - manage the tool panel (I need to get order in the chaos)
I'm wondering how the usegalaxy instances manage this? Is there some github that I could browse?
Cheers, Matthias
Hi Bjoern,
nothing really fancy for usegalaxy.eu but we maintain this repo here:
https://github.com/usegalaxy-eu/usegalaxy-eu-tools
We have agreed on a set of labels and lint the tools against this white list. The tools are installed automatically with ephemeris.
Cool. Is there also a mechanism for ordering the toolpanel? Or do you do this manually? If so, how? Via the integrated toolpanel xml file?
Quotas are managed manually to a large degree, as we do not have that many different once.
OK. Thanks a lot for your reply.
Cheers, Bjoern
Am 20.06.2018 um 15:54 schrieb Matthias Bernt:
Dear list,
I'm looking for some inspiration for managing my galaxy instance (with ansible). In particular I'm looking for ansible roles to - setup quotas - manage the tool panel (I need to get order in the chaos)
I'm wondering how the usegalaxy instances manage this? Is there some github that I could browse?
Cheers, Matthias
-- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------
HI, Am 22.06.2018 um 11:47 schrieb Matthias Bernt:
Hi Bjoern,
nothing really fancy for usegalaxy.eu but we maintain this repo here:
https://github.com/usegalaxy-eu/usegalaxy-eu-tools
We have agreed on a set of labels and lint the tools against this white list. The tools are installed automatically with ephemeris.
Cool. Is there also a mechanism for ordering the toolpanel? Or do you do this manually? If so, how? Via the integrated toolpanel xml file?
In our tool_conf.xml file we have all categories included (most of them without tools), and this defines the order.
Quotas are managed manually to a large degree, as we do not have that many different once.
OK. Thanks a lot for your reply.
Cheers, Bjoern
Am 20.06.2018 um 15:54 schrieb Matthias Bernt:
Dear list,
I'm looking for some inspiration for managing my galaxy instance (with ansible). In particular I'm looking for ansible roles to - setup quotas - manage the tool panel (I need to get order in the chaos)
I'm wondering how the usegalaxy instances manage this? Is there some github that I could browse?
Cheers, Matthias
participants (2)
-
Björn Grüning -
Matthias Bernt