6:54 a.m.
Dear list,
I'm looking for some inspiration for managing my galaxy instance (with
ansible). In particular I'm looking for ansible roles to
- setup quotas
- manage the tool panel (I need to get order in the chaos)
I'm wondering how the usegalaxy instances manage this? Is there some
github that I could browse?
Cheers,
Matthias
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt(a)ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
1:44 a.m.
Hi Matthias,
nothing really fancy for usegalaxy.eu but we maintain this repo here:
https://github.com/usegalaxy-eu/usegalaxy-eu-tools
We have agreed on a set of labels and lint the tools against this white
list. The tools are installed automatically with ephemeris.
Quotas are managed manually to a large degree, as we do not have that
many different once.
Cheers,
Bjoern
Am 20.06.2018 um 15:54 schrieb Matthias Bernt:
Dear list,
I'm looking for some inspiration for managing my galaxy instance (with
ansible). In particular I'm looking for ansible roles to
- setup quotas
- manage the tool panel (I need to get order in the chaos)
I'm wondering how the usegalaxy instances manage this? Is there some
github that I could browse?
Cheers,
Matthias
2:47 a.m.
Hi Bjoern,
nothing really fancy for usegalaxy.eu but we maintain this repo
here:
https://github.com/usegalaxy-eu/usegalaxy-eu-tools
We have agreed on a set of labels and lint the tools against this white
list. The tools are installed automatically with ephemeris.
Cool. Is there also a mechanism for ordering the toolpanel? Or do you do
this manually? If so, how? Via the integrated toolpanel xml file?
Quotas are managed manually to a large degree, as we do not have that
many different once.
OK. Thanks a lot for your reply.
Cheers,
Bjoern
Am 20.06.2018 um 15:54 schrieb Matthias Bernt:
> Dear list,
>
> I'm looking for some inspiration for managing my galaxy instance (with
> ansible). In particular I'm looking for ansible roles to
> - setup quotas
> - manage the tool panel (I need to get order in the chaos)
>
> I'm wondering how the usegalaxy instances manage this? Is there some
> github that I could browse?
>
> Cheers,
> Matthias
>
>
--
-------------------------------------------
Matthias Bernt
Bioinformatics Service
Molekulare Systembiologie (MOLSYB)
Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
Helmholtz Centre for Environmental Research GmbH - UFZ
Permoserstraße 15, 04318 Leipzig, Germany
Phone +49 341 235 482296,
m.bernt(a)ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig
Registergericht/Registration Office: Amtsgericht Leipzig
Handelsregister Nr./Trade Register Nr.: B 4703
Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
MinDirig Wilfried Kraus
Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
Prof. Dr. Dr. h.c. Georg Teutsch
Administrative Geschäftsführerin/ Administrative Managing Director:
Prof. Dr. Heike Graßmann
-------------------------------------------
2:58 a.m.
HI,
Am 22.06.2018 um 11:47 schrieb Matthias Bernt:
Hi Bjoern,
> nothing really fancy for usegalaxy.eu but we maintain this repo here:
>
> https://github.com/usegalaxy-eu/usegalaxy-eu-tools
>
> We have agreed on a set of labels and lint the tools against this
> white list. The tools are installed automatically with ephemeris.
Cool. Is there also a mechanism for ordering the toolpanel? Or do you do
this manually? If so, how? Via the integrated toolpanel xml file?
In our tool_conf.xml file we have all categories included (most of them
without tools), and this defines the order.
> Quotas are managed manually to a large degree, as we do not have
that
> many different once.
OK. Thanks a lot for your reply.
> Cheers,
> Bjoern
>
> Am 20.06.2018 um 15:54 schrieb Matthias Bernt:
>> Dear list,
>>
>> I'm looking for some inspiration for managing my galaxy instance
>> (with ansible). In particular I'm looking for ansible roles to
>> - setup quotas
>> - manage the tool panel (I need to get order in the chaos)
>>
>> I'm wondering how the usegalaxy instances manage this? Is there some
>> github that I could browse?
>>
>> Cheers,
>> Matthias
>>
>>
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Björn Grüning -
Matthias Bernt