planemo update failing on testtoolshed
Hi there I'm trying to update a newly created tool on the test tool shed and I get this error: $ planemo shed_update -t testtoolshed cd '/home/pvh/PycharmProjects/split_fasta_chunks' && git rev-parse HEAD cd '/home/pvh/PycharmProjects/split_fasta_chunks' && git diff --quiet Could not update split_fasta_chunks Unexpected response from galaxy: 500: <html> <head><title>Internal Server Error</title></head> <body> <h1>Internal Server Error</h1> <p>The server has either erred or is incapable of performing the requested operation. <br/> <!-- --></p> <hr noshade> <div align="right">WSGI Server</div> </body> </html> Repository metadata updated. Failed to update a repository. I might have accidentally created a "bad" repository that is leading to this error. This is with version 0.23.0. Alternately, is there a way to delete the tool so that I can try and recreate it? Thanks! Peter
Hi Peter, can you try to delete files with the web interface? I saw the tool name, do you know this small tool? https://github.com/bgruening/galaxytools/blob/master/tools/splitfasta/splitF... Cheers, Bjoern Am 18.03.2016 um 20:03 schrieb Peter van Heusden:
Hi there
I'm trying to update a newly created tool on the test tool shed and I get this error:
$ planemo shed_update -t testtoolshed cd '/home/pvh/PycharmProjects/split_fasta_chunks' && git rev-parse HEAD cd '/home/pvh/PycharmProjects/split_fasta_chunks' && git diff --quiet Could not update split_fasta_chunks Unexpected response from galaxy: 500: <html> <head><title>Internal Server Error</title></head> <body> <h1>Internal Server Error</h1> <p>The server has either erred or is incapable of performing the requested operation.
<br/> <!-- --></p> <hr noshade> <div align="right">WSGI Server</div> </body> </html>
Repository metadata updated. Failed to update a repository.
I might have accidentally created a "bad" repository that is leading to this error. This is with version 0.23.0. Alternately, is there a way to delete the tool so that I can try and recreate it?
Thanks! Peter
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The repo is empty, so there is nothing to delete at this stage. And I can't figure out how to delete the thing entirely. I looked at the splitFasta tool, and also the splitfasta tool from rnateam (in the test toolshed) and these split into 1 file for each sequence as opposed to a certain number of chunks. Peter On 18 March 2016 at 21:11, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Peter,
can you try to delete files with the web interface?
I saw the tool name, do you know this small tool?
https://github.com/bgruening/galaxytools/blob/master/tools/splitfasta/splitF...
Cheers, Bjoern
Am 18.03.2016 um 20:03 schrieb Peter van Heusden:
Hi there
I'm trying to update a newly created tool on the test tool shed and I get this error:
$ planemo shed_update -t testtoolshed cd '/home/pvh/PycharmProjects/split_fasta_chunks' && git rev-parse HEAD cd '/home/pvh/PycharmProjects/split_fasta_chunks' && git diff --quiet Could not update split_fasta_chunks Unexpected response from galaxy: 500: <html> <head><title>Internal Server Error</title></head> <body> <h1>Internal Server Error</h1> <p>The server has either erred or is incapable of performing the requested operation.
<br/> <!-- --></p> <hr noshade> <div align="right">WSGI Server</div> </body> </html>
Repository metadata updated. Failed to update a repository.
I might have accidentally created a "bad" repository that is leading to this error. This is with version 0.23.0. Alternately, is there a way to delete the tool so that I can try and recreate it?
Thanks! Peter
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
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Björn Grüning -
Peter van Heusden