Hi all! Is there such a timeout setting? I use different parameters (which take much longer) and I get an empty dataset (no errors in stdout/err and paster.log). Normally, for smaller runs, the tool works fine. A quick look in the conf files seems to indicate that the answer to the above is no. Any ideas/suggestions? Thank you, Kostas
Hi Kostas, Would you be able to share a history that contains the dataset and the timed-out tool? Please share params used and the history item #'s for the failed vs. passed runs, if it is not clearly labeled (if you ran a few times). There is no timeout, but we can check for other things that may have contributed to the empty result. Thanks! On 10/22/10 8:19 AM, Kostas Karasavvas wrote:
Hi all!
Is there such a timeout setting? I use different parameters (which take much longer) and I get an empty dataset (no errors in stdout/err and paster.log). Normally, for smaller runs, the tool works fine.
A quick look in the conf files seems to indicate that the answer to the above is no.
Any ideas/suggestions?
Thank you, Kostas
_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
-- Jennifer Jackson http://usegalaxy.org
Hi Jennifer and thank you for the answer. I found out what was the problem. One of the parameters had a whitespace in the new query and the argument was not quoted in the .xml file. Thanks again, Kostas On 22 October 2010 21:30, Jennifer Jackson <jen@bx.psu.edu> wrote:
Hi Kostas,
Would you be able to share a history that contains the dataset and the timed-out tool? Please share params used and the history item #'s for the failed vs. passed runs, if it is not clearly labeled (if you ran a few times). There is no timeout, but we can check for other things that may have contributed to the empty result.
Thanks!
On 10/22/10 8:19 AM, Kostas Karasavvas wrote:
Hi all!
Is there such a timeout setting? I use different parameters (which take much longer) and I get an empty dataset (no errors in stdout/err and paster.log). Normally, for smaller runs, the tool works fine.
A quick look in the conf files seems to indicate that the answer to the above is no.
Any ideas/suggestions?
Thank you, Kostas
_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
-- Jennifer Jackson http://usegalaxy.org
participants (2)
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Jennifer Jackson
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Kostas Karasavvas