Hi, I am setting up apache over a remote server on which a virtual apache was previously installed under /seq/../iwww. Set up of this directory looks something like this: /seq/../iwww -->apache/ -->sites-available/ -->defaults -->sites-enabled/ -->myPublic.conf (this is equivalent to httpd.conf) As John suggested to start with an easier apache config: I have done the following:- 1) In defaults I have this: <VirtualHost *:80> ..... ..... RewriteEngine on RewriteRule ^(.*) [http://[IP address]:8080/]$1 [P] 2) In myPublic.conf I have these two directories: <Directory "/seq/RNASEQ/iwww/htdocs"> Options +ExecCGI AllowOverride All DirectoryIndex index.html index.cgi AddHandler cgi-script .cgi Order Allow,Deny Allow from All <FilesMatch "\.ini"> Deny from all </FilesMatch> </Directory> <Directory "/seq/regev_genome_portal/SOFTWARE/galaxy"> AllowOverride All DirectoryIndex static/welcome.html Order Allow,Deny Allow from All <FilesMatch "\.ini"> Deny from all </FilesMatch> At this point I am not sure in which direction should I go to get this running off of apache. Kindly note: I am able to start an apache instance by executing sh run.sh and the galaxy instance is up and running through the IP address. Please advice. Thank you, Asma On Tue, Apr 21, 2015 at 9:57 AM, John Chilton <jmchilton@gmail.com> wrote:

This configuration looks correct - are you sure the correct properties are set in config/galaxy.ini:

You need this section:

[filter:proxy-prefix] use = egg:PasteDeploy#prefix prefix = /galaxy

And [app:main] needs following properties:

filter-with = proxy-prefix cookie_path = /galaxy

I would also make sure your Galaxy is up and running on port 8080 - maybe by running a command such as

wget http://127.0.0.1:8080

from the server to make sure you get a response from Galaxy.

If none of that leads to clues - it might be worth starting with the easier apache proxy configuration (serving on / instead of /galaxy) and getting that working first to rule out Galaxy and very basic Apache configuration problems.

-John

On Fri, Apr 17, 2015 at 11:50 AM, Asma Riyaz <asmariyaz23@gmail.com> wrote:

...

Hi,

I have been through previous issues regarding this issue. So far, I have included the rewrite Engine logic written in /etc/apache2/sites-available/defaults - looks like so:

<VirtualHost *:80>

.....

.....

RewriteEngine on

RewriteRule ^/galaxy$ /galaxy/ [R]

RewriteRule ^/galaxy/static/style/(.*) /seq/SOFTWARE/galaxy/static/june_2007_style/blue/$1 [L]

RewriteRule ^/galaxy/static/scripts/(.*) /seq/SOFTWARE/galaxy/static/scripts/packed/$1 [L]

RewriteRule ^/galaxy/static/(.*) /seq/SOFTWARE/galaxy/static/$1 [L]

RewriteRule ^/galaxy/favicon.ico /seq/SOFTWARE/galaxy/static/favicon.ico [L]

RewriteRule ^/galaxy/robots.txt /seq/SOFTWARE/galaxy/static/robots.txt [L]

RewriteRule ^/galaxy(.*) http://[my IP address]/$1 [P]

I restarted apache after this and accessed : http://[my IP address]/galaxy but no webpage is found. Any advice on how I can proceed to configure the apache correctly?

Thank you,

Asma

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