Re: [galaxy-dev] Improved DRMAAJobRunner (Peter van Heusden)
Dear Peter, my job_conf.xml is attached. Best, Matthuas On 08.07.2017 18:00, galaxy-dev-request@lists.galaxyproject.org wrote:
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1. Re: any introduce for how Mako and JavaScript work in galaxy? (Daniel Blankenberg) 2. Re: ustacks - bad interpreter (Björn Grüning) 3. Re: Improved DRMAAJobRunner (Peter van Heusden) (Matthias Bernt) 4. Re: Improved DRMAAJobRunner (Peter van Heusden) (Peter van Heusden)
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Message: 1 Date: Thu, 6 Jul 2017 22:36:27 -0400 From: Daniel Blankenberg <dan.blankenberg@gmail.com> To: Steven Shen <ishenweiyan@gmail.com> Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] any introduce for how Mako and JavaScript work in galaxy? Message-ID: <CAE9nRFg+Edj2=3+K=6+FZCxj5=hb4toGW+Lm++E+SD1+J2+vbw@mail.gmail.com> Content-Type: text/plain; charset="utf-8"
Hi Steven,
For a quick first pass, have you taken a look at https://github.com/ galaxyproject/galaxy/blob/dev/client/README.md?
Thanks for using Galaxy,
Dan
On Thu, Jul 6, 2017 at 10:11 PM, Steven Shen <ishenweiyan@gmail.com> wrote:
Hi everyone,
I want to make some change for my local galaxy web, actually I can edit galaxy_path/static/scripts/bundled/*.js directly.
It seems mako templates are used for galaxy, as well as many JavaScript files, but I don't know how they work. So is there any introduce for how mako and JavaScript files working in galaxy?
Thank you very much.
Steven
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Hi Peter, FYI: just found on the galaxy documentation a paragraph that even recommends running upload on the cluster: https://galaxyproject.org/admin/config/performance/cluster/ """ If your cluster nodes have Internet access (NAT is okay) and you want to run the data source tools (upload, ucsc, etc.) on the cluster (doing so is highly recommended), set new_file_path in galaxy.ini to a directory somewhere in your shared filesystem: """ Cheers, Matthias On 10.07.2017 11:11, Matthias Bernt wrote:
Dear Peter,
my job_conf.xml is attached.
Best, Matthuas
On 08.07.2017 18:00, galaxy-dev-request@lists.galaxyproject.org wrote:
Send galaxy-dev mailing list submissions to galaxy-dev@lists.galaxyproject.org
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You can reach the person managing the list at galaxy-dev-owner@lists.galaxyproject.org
When replying, please edit your Subject line so it is more specific than "Re: Contents of galaxy-dev digest..."
HEY! This is important! If you reply to a thread in a digest, please 1. Change the subject of your response from "Galaxy-dev Digest Vol ..." to the original subject for the thread. 2. Strip out everything else in the digest that is not part of the thread you are responding to.
Why? 1. This will keep the subject meaningful. People will have some idea from the subject line if they should read it or not. 2. Not doing this greatly increases the number of emails that match search queries, but that aren't actually informative.
Today's Topics:
1. Re: any introduce for how Mako and JavaScript work in galaxy? (Daniel Blankenberg) 2. Re: ustacks - bad interpreter (Björn Grüning) 3. Re: Improved DRMAAJobRunner (Peter van Heusden) (Matthias Bernt) 4. Re: Improved DRMAAJobRunner (Peter van Heusden) (Peter van Heusden)
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Message: 1 Date: Thu, 6 Jul 2017 22:36:27 -0400 From: Daniel Blankenberg <dan.blankenberg@gmail.com> To: Steven Shen <ishenweiyan@gmail.com> Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] any introduce for how Mako and JavaScript work in galaxy? Message-ID: <CAE9nRFg+Edj2=3+K=6+FZCxj5=hb4toGW+Lm++E+SD1+J2+vbw@mail.gmail.com> Content-Type: text/plain; charset="utf-8"
Hi Steven,
For a quick first pass, have you taken a look at https://github.com/ galaxyproject/galaxy/blob/dev/client/README.md?
Thanks for using Galaxy,
Dan
On Thu, Jul 6, 2017 at 10:11 PM, Steven Shen <ishenweiyan@gmail.com> wrote:
Hi everyone,
I want to make some change for my local galaxy web, actually I can edit galaxy_path/static/scripts/bundled/*.js directly.
It seems mako templates are used for galaxy, as well as many JavaScript files, but I don't know how they work. So is there any introduce for how mako and JavaScript files working in galaxy?
Thank you very much.
Steven
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
Hi Matthias My job_conf.xml still has the old config of running upload locally, so it has a section <tools> <tool id="upload1" handler="handlers" destination="local"/> </tools> after the <destination> section. Are you using a proxy such as nginx with your Galaxy server? Thanks, Peter On Mon, 10 Jul 2017 at 11:50 Matthias Bernt <m.bernt@ufz.de> wrote:
Hi Peter,
FYI: just found on the galaxy documentation a paragraph that even recommends running upload on the cluster:
https://galaxyproject.org/admin/config/performance/cluster/
""" If your cluster nodes have Internet access (NAT is okay) and you want to run the data source tools (upload, ucsc, etc.) on the cluster (doing so is highly recommended), set new_file_path in galaxy.ini to a directory somewhere in your shared filesystem: """
Cheers, Matthias
On 10.07.2017 11:11, Matthias Bernt wrote:
Dear Peter,
my job_conf.xml is attached.
Best, Matthuas
On 08.07.2017 18:00, galaxy-dev-request@lists.galaxyproject.org wrote:
Send galaxy-dev mailing list submissions to galaxy-dev@lists.galaxyproject.org
To subscribe or unsubscribe via the World Wide Web, visit https://lists.galaxyproject.org/listinfo/galaxy-dev or, via email, send a message with subject or body 'help' to galaxy-dev-request@lists.galaxyproject.org
You can reach the person managing the list at galaxy-dev-owner@lists.galaxyproject.org
When replying, please edit your Subject line so it is more specific than "Re: Contents of galaxy-dev digest..."
HEY! This is important! If you reply to a thread in a digest, please 1. Change the subject of your response from "Galaxy-dev Digest Vol ..." to the original subject for the thread. 2. Strip out everything else in the digest that is not part of the thread you are responding to.
Why? 1. This will keep the subject meaningful. People will have some idea from the subject line if they should read it or not. 2. Not doing this greatly increases the number of emails that match search queries, but that aren't actually informative.
Today's Topics:
1. Re: any introduce for how Mako and JavaScript work in galaxy? (Daniel Blankenberg) 2. Re: ustacks - bad interpreter (Björn Grüning) 3. Re: Improved DRMAAJobRunner (Peter van Heusden) (Matthias Bernt) 4. Re: Improved DRMAAJobRunner (Peter van Heusden) (Peter van Heusden)
----------------------------------------------------------------------
Message: 1 Date: Thu, 6 Jul 2017 22:36:27 -0400 From: Daniel Blankenberg <dan.blankenberg@gmail.com> To: Steven Shen <ishenweiyan@gmail.com> Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] any introduce for how Mako and JavaScript work in galaxy? Message-ID: <CAE9nRFg+Edj2=3+K=6+FZCxj5=hb4toGW+Lm++E+SD1+J2+vbw@mail.gmail.com
Content-Type: text/plain; charset="utf-8"
Hi Steven,
For a quick first pass, have you taken a look at https://github.com/ galaxyproject/galaxy/blob/dev/client/README.md?
Thanks for using Galaxy,
Dan
On Thu, Jul 6, 2017 at 10:11 PM, Steven Shen <ishenweiyan@gmail.com> wrote:
Hi everyone,
I want to make some change for my local galaxy web, actually I can edit galaxy_path/static/scripts/bundled/*.js directly.
It seems mako templates are used for galaxy, as well as many JavaScript files, but I don't know how they work. So is there any introduce for how mako and JavaScript files working in galaxy?
Thank you very much.
Steven
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
participants (2)
-
Matthias Bernt -
Peter van Heusden