Hey,
I wonder if it is possible to let a self-written script, dynamically create workflows. The idea is to create a pipeline, by providing the user a kind of analysis webpage where he can select a certain set of tools and parameters and the output of this interface should be a workflow.
And another question. If if have a workflow consisting of a set of tools, will galaxy create a single cluster job consisting of all tools, or one job for each tool and the run them sequential? This would be important if one script pipes directly to another.
Thx, Michael :-)
Hi Michael,
We currently don't have functionality for dynamically generated workflows but it's been on the todo list for a while. As for running, we do a topological sort on the tasks and then create a new job for each step, so you don't have to worry about dependencies
Kanwei
On Thu, Aug 5, 2010 at 7:45 AM, Michael Siebauer michael_siebauer@eva.mpg.de wrote:
Hey,
I wonder if it is possible to let a self-written script, dynamically create workflows. The idea is to create a pipeline, by providing the user a kind of analysis webpage where he can select a certain set of tools and parameters and the output of this interface should be a workflow.
And another question. If if have a workflow consisting of a set of tools, will galaxy create a single cluster job consisting of all tools, or one job for each tool and the run them sequential? This would be important if one script pipes directly to another.
Thx, Michael :-) _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
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Kanwei Li -
Michael Siebauer