We currently don't have functionality for dynamically generated
workflows but it's been on the todo list for a while. As for running,
we do a topological sort on the tasks and then create a new job for
each step, so you don't have to worry about dependencies
On Thu, Aug 5, 2010 at 7:45 AM, Michael Siebauer
I wonder if it is possible to let a self-written script, dynamically create
workflows. The idea is to create a pipeline, by providing the user a kind of
analysis webpage where he can select a certain set of tools and parameters
and the output of this interface should be a workflow.
And another question. If if have a workflow consisting of a set of tools,
will galaxy create a single cluster job consisting of all tools, or one job
for each tool and the run them sequential? This would be important if one
script pipes directly to another.
Thx, Michael :-)
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