Wondering if anyone has tooling to test a workflow as it exists in a specific galaxy instance? I'm looking to test some of my user's manually built workflows in our galaxy instance to make sure that we can detect issues when they arise (e.g. due to changes in the interfaces of our non-toolshed installed tools) Ideally something like: $ my_tool $galaxy_url $api_key $workflow_id <set of files and their input IDs in the workflow>
report.xunit.xml
If not we'll build something soon. Cheers, Eric
Hi Eric, this is a script I have used in the past https://github.com/scholtalbers/galaxy-test-workflows It doesn't give you the nice feedback that you probably want, but maybe you have some use for it anyway. Cheers, Jelle On Wed, Dec 14, 2016 at 4:26 AM, Eric Rasche <esr@tamu.edu> wrote:
Wondering if anyone has tooling to test a workflow as it exists in a specific galaxy instance? I'm looking to test some of my user's manually built workflows in our galaxy instance to make sure that we can detect issues when they arise (e.g. due to changes in the interfaces of our non-toolshed installed tools)
Ideally something like:
$ my_tool $galaxy_url $api_key $workflow_id <set of files and their input IDs in the workflow>
report.xunit.xml
If not we'll build something soon.
Cheers, Eric
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
-
Eric Rasche
-
Jelle Scholtalbers