redirecting to unnamed history
Hi I am running a work flow on data in a history with 54 input fastq files. About every other time I run Galaxy generates another history (unnamed) and sends a third to half the jobs to it. I am not clicking "send results to a new history" so I am not sure why this is happening. Any ideas? Is there something I should be looking for in galaxy's log file. Thanks for any help, Mike Info from hg head. changeset: 13753:d3b1f484c4b6 branch: stable tag: tip parent: 13751:deba1986ea22 parent: 13752:0af879ff3097 user: Nate Coraor <nate@bx.psu.edu> date: Tue Jul 15 11:33:46 2014 -0400 summary: Merged in dannon/galaxy-central-prmaker/stable (pull request #439) changeset: 13709:5273e0bf9ae5 parent: 13707:15d426f19dcc parent: 13708:8b6e1ffaa053 user: Dannon Baker <dannonbaker@me.com> date: Mon Jun 02 13:16:51 2014 -0400 summary: merge next-stable ________________________________ --CONFIDENTIALITY NOTICE--: The information contained in this email is intended for the exclusive use of the addressee and may contain confidential information. If you are not the intended recipient, you are hereby notified that any form of dissemination of this communication is strictly prohibited. www.benaroyaresearch.org
Interesting. I have never seen that behavior before - any chance you can try this patch and see if it fixes the problem? https://gist.github.com/jmchilton/b9ae7588de4b21e59cec -John On Tue, Aug 19, 2014 at 1:24 PM, Michael Mason <MMason@benaroyaresearch.org> wrote:
Hi I am running a work flow on data in a history with 54 input fastq files. About every other time I run Galaxy generates another history (unnamed) and sends a third to half the jobs to it. I am not clicking "send results to a new history" so I am not sure why this is happening. Any ideas? Is there something I should be looking for in galaxy's log file. Thanks for any help, Mike
Info from hg head.
changeset: 13753:d3b1f484c4b6 branch: stable tag: tip parent: 13751:deba1986ea22 parent: 13752:0af879ff3097 user: Nate Coraor <nate@bx.psu.edu> date: Tue Jul 15 11:33:46 2014 -0400 summary: Merged in dannon/galaxy-central-prmaker/stable (pull request #439)
changeset: 13709:5273e0bf9ae5 parent: 13707:15d426f19dcc parent: 13708:8b6e1ffaa053 user: Dannon Baker <dannonbaker@me.com> date: Mon Jun 02 13:16:51 2014 -0400 summary: merge next-stable
________________________________ --CONFIDENTIALITY NOTICE--: The information contained in this email is intended for the exclusive use of the addressee and may contain confidential information. If you are not the intended recipient, you are hereby notified that any form of dissemination of this communication is strictly prohibited. www.benaroyaresearch.org
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Thanks John, I cleaned things up with the python png script under scripts/clean up and that seams to have worked. We are freezing our pipeline for a month but if it happens again we'll try the patch and let you know how it goes. -------- Original message -------- From: John Chilton Date:08/19/2014 5:38 PM (GMT-08:00) To: Michael Mason Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] redirecting to unnamed history Interesting. I have never seen that behavior before - any chance you can try this patch and see if it fixes the problem? https://gist.github.com/jmchilton/b9ae7588de4b21e59cec -John On Tue, Aug 19, 2014 at 1:24 PM, Michael Mason <MMason@benaroyaresearch.org> wrote:
Hi I am running a work flow on data in a history with 54 input fastq files. About every other time I run Galaxy generates another history (unnamed) and sends a third to half the jobs to it. I am not clicking "send results to a new history" so I am not sure why this is happening. Any ideas? Is there something I should be looking for in galaxy's log file. Thanks for any help, Mike
Info from hg head.
changeset: 13753:d3b1f484c4b6 branch: stable tag: tip parent: 13751:deba1986ea22 parent: 13752:0af879ff3097 user: Nate Coraor <nate@bx.psu.edu> date: Tue Jul 15 11:33:46 2014 -0400 summary: Merged in dannon/galaxy-central-prmaker/stable (pull request #439)
changeset: 13709:5273e0bf9ae5 parent: 13707:15d426f19dcc parent: 13708:8b6e1ffaa053 user: Dannon Baker <dannonbaker@me.com> date: Mon Jun 02 13:16:51 2014 -0400 summary: merge next-stable
________________________________ --CONFIDENTIALITY NOTICE--: The information contained in this email is intended for the exclusive use of the addressee and may contain confidential information. If you are not the intended recipient, you are hereby notified that any form of dissemination of this communication is strictly prohibited. www.benaroyaresearch.org<http://www.benaroyaresearch.org>
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
--CONFIDENTIALITY NOTICE--: The information contained in this email is intended for the exclusive use of the addressee and may contain confidential information. If you are not the intended recipient, you are hereby notified that any form of dissemination of this communication is strictly prohibited. www.benaroyaresearch.org
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Michael Mason