On 04/08/2010 03:35 PM, Daniel Blankenberg wrote:

Hi Hans,

In datatypes_conf.xml remove or comment out the GeneTrack display. i.e. change occurrences of: <display file="genetrack.xml" /> to <!--<display file="genetrack.xml" /> -->

D'oh! of course - thank you very much for the help Hans

Thanks,

Dan

On Apr 7, 2010, at 7:43 AM, Hotz, Hans-Rudolf wrote:

...

Hi

I fully appreciate the fact that the visualization module is still in development - although, I am looking very much forward to use it.

In the meantime, is there a way to remove the link "view in GeneTrack" you get for all the BED files in your history?

I am running changeset 3545 and I have the following lines commented in my 'universe_wsgi.ini' file:

# Uncomment following line below to enable visualization module #enable_tracks = True

# Comma separated list of UCSC / gbrowse browsers to use for viewing #ucsc_display_sites = main #gbrowse_display_sites = main # Define your GeneTrack servers in tool-data/shared/genetrack/genetrack_sites.txt #genetrack_display_sites =

Nevertheless, I get a link like:

http://galaxy-dev.fmi.ch/display_application/d12c5c8ceaef53e4/genetrack_inte rval/genetrack

which (if clicked on) results in an Error with the following message: "Exception: A data display parameter is in the error state: genetrack_file"

I am running another course next week promoting the use of our local galaxy server, and people will probably stumble across this broken link

Thank you very much for your help

Hans

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