Cannot access saved history nor saved datasets
I am able to use my current history and run tools but I can't move away nor create new histories. I am currently using the Cistrome instance of Galaxy. Here is the error I receive: Internal Server Error Galaxy was unable to successfully complete your request URL: http://cistrome.org/ap/history/list Module galaxy.web.framework.middleware.error:149 in __call__
<http://cistrome.org/ap/history/list#> app_iter = self.application(environ, sr_checker) Module paste.recursive:84 in __call__ <http://cistrome.org/ap/history/list#> return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ <http://cistrome.org/ap/history/list#> return self.application(environ, start_response) Module galaxy.web.framework.base:132 in __call__ <http://cistrome.org/ap/history/list#> return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:190 in handle_request <http://cistrome.org/ap/history/list#> body = method( trans, **kwargs ) Module galaxy.web.framework:98 in decorator <http://cistrome.org/ap/history/list#> return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.history:294 in list <http://cistrome.org/ap/history/list#> return self.stored_list_grid( trans, status=status, message=message, **kwargs ) Module galaxy.web.framework.helpers.grids:209 in __call__ <http://cistrome.org/ap/history/list#> total_num_rows = query.count() Module sqlalchemy.orm.query:2571 in count Module sqlalchemy.orm.query:2215 in scalar Module sqlalchemy.orm.query:2184 in one Module sqlalchemy.orm.query:2227 in __iter__ Module sqlalchemy.orm.query:2242 in _execute_and_instances Module sqlalchemy.engine.base:1449 in execute Module sqlalchemy.engine.base:1584 in _execute_clauseelement Module sqlalchemy.engine.base:1698 in _execute_context Module sqlalchemy.engine.base:1691 in _execute_context Module sqlalchemy.engine.default:331 in do_execute Module MySQLdb.cursors:173 in execute Module MySQLdb.connections:36 in defaulterrorhandler OperationalError: (OperationalError) (1030, 'Got error 28 from storage engine') 'SELECT count(*) AS count_1 \nFROM (SELECT history.id AS history_id, history.create_time AS history_create_time, history.update_time AS history_update_time, history.user_id AS history_user_id, history.name AS history_name, history.hid_counter AS history_hid_counter, history.deleted AS history_deleted, history.purged AS history_purged, history.importing AS history_importing, history.genome_build AS history_genome_build, history.importable AS history_importable, history.slug AS history_slug, history.published AS history_published \nFROM history \nWHERE history.importing = %s AND %s = history.user_id AND history.deleted = %s ORDER BY history.update_time DESC) AS anon_1' (0, 1889L, 0)
Any suggestions or more information you need? -Josh
Hi Joshua, If you are still having issues, you'll want to contact the folks running that specific instance for support. They'll know the state of the server. See this link, under the section "User Support" for their google group contact: https://wiki.galaxyproject.org/PublicGalaxyServers#Cistrome_Analysis_Pipelin... Best, Jen Galaxy team On 5/1/14 12:01 PM, Joshua David Aaker wrote:
I am able to use my current history and run tools but I can't move away nor create new histories.
I am currently using the Cistrome instance of Galaxy.
Here is the error I receive:
Internal Server Error
Galaxy was unable to successfully complete your request
URL: http://cistrome.org/ap/history/list Module galaxy.web.framework.middleware.error:*149* in |__call__| |>> <http://cistrome.org/ap/history/list#>app_iter *=* self*.*application*(*environ*,* sr_checker*)*| Module paste.recursive:*84* in |__call__| |>> <http://cistrome.org/ap/history/list#>*return* self*.*application*(*environ*,* start_response*)*| Module paste.httpexceptions:*633* in |__call__| |>> <http://cistrome.org/ap/history/list#>*return* self*.*application*(*environ*,* start_response*)*| Module galaxy.web.framework.base:*132* in |__call__| |>> <http://cistrome.org/ap/history/list#>*return* self*.*handle_request*(* environ*,* start_response *)*| Module galaxy.web.framework.base:*190* in |handle_request| |>> <http://cistrome.org/ap/history/list#>body *=* method*(* trans*,* ****kwargs *)*| Module galaxy.web.framework:*98* in |decorator| |>> <http://cistrome.org/ap/history/list#>*return* func*(* self*,* trans*,* ***args*,* ****kwargs *)*| Module galaxy.webapps.galaxy.controllers.history:*294* in |list| |>> <http://cistrome.org/ap/history/list#>*return* self*.*stored_list_grid*(* trans*,* status*=*status*,* message*=*message*,* ****kwargs *)*| Module galaxy.web.framework.helpers.grids:*209* in |__call__| |>> <http://cistrome.org/ap/history/list#>total_num_rows *=* query*.*count*(**)*| Module sqlalchemy.orm.query:*2571* in |count| Module sqlalchemy.orm.query:*2215* in |scalar| Module sqlalchemy.orm.query:*2184* in |one| Module sqlalchemy.orm.query:*2227* in |__iter__| Module sqlalchemy.orm.query:*2242* in |_execute_and_instances| Module sqlalchemy.engine.base:*1449* in |execute| Module sqlalchemy.engine.base:*1584* in |_execute_clauseelement| Module sqlalchemy.engine.base:*1698* in |_execute_context| Module sqlalchemy.engine.base:*1691* in |_execute_context| Module sqlalchemy.engine.default:*331* in |do_execute| Module MySQLdb.cursors:*173* in |execute| Module MySQLdb.connections:*36* in |defaulterrorhandler| *OperationalError: (OperationalError) (1030, 'Got error 28 from storage engine') 'SELECT count(*) AS count_1 \nFROM (SELECT history.id AS history_id, history.create_time AS history_create_time, history.update_time AS history_update_time, history.user_id AS history_user_id, history.name AS history_name, history.hid_counter AS history_hid_counter, history.deleted AS history_deleted, history.purged AS history_purged, history.importing AS history_importing, history.genome_build AS history_genome_build, history.importable AS history_importable, history.slug AS history_slug, history.published AS history_published \nFROM history \nWHERE history.importing = %s AND %s = history.user_id AND history.deleted = %s ORDER BY history.update_time DESC) AS anon_1' (0, 1889L, 0)*
Any suggestions or more information you need?
-Josh
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participants (2)
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Jennifer Jackson
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Joshua David Aaker