MGTAXA taxonomic prediction does not work...
Hello. My name is Anna Edlund and I have loaded several files containing contigs of assembled metgenomic data to generate taxonomic predictions. However, no one of the jobs I submitted yesterday afternoon are finished. Do you know what the problem is? How can I make MGTAXA work faster? Any help with this is very appreciated. Thank you! Anna
I assume you are using the mgtaxa Galaxy instance at JCVI. I've copied the mgtaxa maintainer on this message. -- James Taylor, Assistant Professor, Biology/CS, Emory University On Fri, Dec 28, 2012 at 11:56 AM, Edlund, Anna <aedlund@jcvi.org> wrote:
Hello.
My name is Anna Edlund and I have loaded several files containing contigs of assembled metgenomic data to generate taxonomic predictions. However, no one of the jobs I submitted yesterday afternoon are finished. Do you know what the problem is? How can I make MGTAXA work faster?
Any help with this is very appreciated.
Thank you!
Anna
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Hello and thank you for your reply. I am using the online version Galaxy/MGTAXA at mgtaxa.jcvi.org I am currently using 1.8 MB and maybe that is too much? Thank you. Anna -----Original Message----- From: james@taylorlab.org [mailto:james@taylorlab.org] On Behalf Of James Taylor Sent: Wednesday, January 02, 2013 7:46 AM To: Edlund, Anna; Tovchigrechko, Andrey Cc: galaxy-dev@bx.psu.edu Subject: Re: [galaxy-dev] MGTAXA taxonomic prediction does not work... I assume you are using the mgtaxa Galaxy instance at JCVI. I've copied the mgtaxa maintainer on this message. -- James Taylor, Assistant Professor, Biology/CS, Emory University On Fri, Dec 28, 2012 at 11:56 AM, Edlund, Anna <aedlund@jcvi.org> wrote:
Hello.
My name is Anna Edlund and I have loaded several files containing contigs of assembled metgenomic data to generate taxonomic predictions. However, no one of the jobs I submitted yesterday afternoon are finished. Do you know what the problem is? How can I make MGTAXA work faster?
Any help with this is very appreciated.
Thank you!
Anna
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
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Edlund, Anna
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James Taylor