error on fastq file while grooming or fastqc report or fastqc converter
Dear I am receiving the same error over and over again "WARNING:galaxy.datatypes.registry:Overriding conflicting datatype with extension 'coverage', using datatype from /mnt/galaxyData/tmp/tmpuTitVp." Whether I run - Fastqc: Fastqc QC <http://ec2-107-21-142-14.compute-1.amazonaws.com/tool_runner?tool_id=fa stqc> using FastQC from Babraham - FASTQ Groomer <http://ec2-107-21-142-14.compute-1.amazonaws.com/tool_runner?tool_id=fa stq_groomer> convert between various FASTQ quality formats Anybode any idea ? Kind Regards Yves
Hello Yves, You have one or more entries in your datatypes_conf.xml file for a datatype named "coverage" These should be eliminated from your datatypes.conf.xml file because they are not valid datatypes (unless you have added proprietary datatypes to your Galaxy instance with this extension). They were originally in the datatypes.conf.xml.sample file for datatype indexers\, but datatype indexers have been eliminated from the Galaxy framework because datatype converters do the same thing. Greg Von Kuster On Feb 17, 2012, at 3:25 AM, Wetzels, Yves [JRDBE Extern] wrote:
Dear
I am receiving the same error over and over again
“WARNING:galaxy.datatypes.registry:Overriding conflicting datatype with extension 'coverage', using datatype from /mnt/galaxyData/tmp/tmpuTitVp.”
Whether I run - Fastqc: Fastqc QC using FastQC from Babraham - FASTQ Groomer convert between various FASTQ quality formats
Anybode any idea ?
Kind Regards Yves
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Greg Von Kuster -
Wetzels, Yves [JRDBE Extern]