11:34 a.m.
On Fri, Jul 22, 2016 at 7:29 AM, Katherine Beaulieu <
katherine.beaulieu014(a)gmail.com> wrote:
No I'm really asking about which files in Galaxy, will load
those
parameters on the screen. I believe you were the one to give me a link to
adding a new parameter type in Galaxy via the password parameter, but I
haven't quite been able to implement that. The two files I have changed so
far are basic.py and form_builder.py but using these two files it still
only loads a text parameter.
On Fri, Jul 22, 2016 at 7:26 AM, Peter Cock <p.j.a.cock(a)googlemail.com>
wrote:
> Hi Katherine,
>
> Are you asking about the XML files which described Galaxy Tools
> by listing all the options to show the user, any help text to show the
> user, and instructions for how to turn the options picked into a
> command line to be executed:
>
> https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax
>
> Peter
>
> On Fri, Jul 22, 2016 at 12:09 PM, Katherine Beaulieu
> <katherine.beaulieu014(a)gmail.com> wrote:
> > Dear all,
> > I am looking for the files/functions that get called from the point
> where
> > you click on the tool name to the point where you get an html version of
> > your tool on the screen. Could someone indicate what this path looks
> like? I
> > would be really appreciative!
> > Thanks,
> > Katherine
> >
> > ___________________________________________________________
> > Please keep all replies on the list by using "reply all"
> > in your mail client. To manage your subscriptions to this
> > and other Galaxy lists, please use the interface at:
> > https://lists.galaxyproject.org/
> >
> > To search Galaxy mailing lists use the unified search at:
> > http://galaxyproject.org/search/mailinglists/
>
11:40 a.m.
New subject: Loading tool config file
Sorry, I know relatively little about how Galaxy loads the tool XML
files and turns this into the HTML pages. I've mostly searched
the codebase with grep at the command line (also searching
directly on GitHub works pretty well) trying to trace functionality
when I was debugging something.
Hopefully one of the Galaxy developers will be able to answer.
Peter
On Fri, Jul 22, 2016 at 7:29 AM, Katherine Beaulieu wrote:
No I'm really asking about which files in Galaxy, will load those
parameters on the screen. I believe you were the one to give me a link to
adding a new parameter type in Galaxy via the password parameter, but I
haven't quite been able to implement that. The two files I have changed so
far are basic.py and form_builder.py but using these two files it still only
loads a text parameter.
12:08 p.m.
New subject: Loading tool config file
Hi Katherine,
This all happens in javascript these days, and it's unfortunately a little
harder to track down all the moving parts than it used to be when this was
all rendered serverside. The client requests tool information (like which
parameters are necessary, etc) from the API, which it then renders using
the primary tool form found here:
https://github.com/galaxyproject/galaxy/blob/dev/client/galaxy/scripts/mv...
This extends the form code found here:
https://github.com/galaxyproject/galaxy/tree/dev/client/galaxy/scripts/mv...
And individual element types (a select box, for example) can be found here:
https://github.com/galaxyproject/galaxy/tree/dev/client/galaxy/scripts/mv...
Does this help?
On Fri, Jul 22, 2016 at 7:40 AM Peter Cock <p.j.a.cock(a)googlemail.com>
wrote:
Sorry, I know relatively little about how Galaxy loads the tool XML
files and turns this into the HTML pages. I've mostly searched
the codebase with grep at the command line (also searching
directly on GitHub works pretty well) trying to trace functionality
when I was debugging something.
Hopefully one of the Galaxy developers will be able to answer.
Peter
On Fri, Jul 22, 2016 at 7:29 AM, Katherine Beaulieu wrote:
>
> No I'm really asking about which files in Galaxy, will load those
> parameters on the screen. I believe you were the one to give me a link to
> adding a new parameter type in Galaxy via the password parameter, but I
> haven't quite been able to implement that. The two files I have changed
so
> far are basic.py and form_builder.py but using these two files it still
only
> loads a text parameter.
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
12:11 p.m.
New subject: Loading tool config file
Yes this does help thanks Dannon!:)
On Fri, Jul 22, 2016 at 8:08 AM, Dannon Baker <dannon.baker(a)gmail.com>
wrote:
Hi Katherine,
This all happens in javascript these days, and it's unfortunately a little
harder to track down all the moving parts than it used to be when this was
all rendered serverside. The client requests tool information (like which
parameters are necessary, etc) from the API, which it then renders using
the primary tool form found here:
https://github.com/galaxyproject/galaxy/blob/dev/client/galaxy/scripts/mv...
This extends the form code found here:
https://github.com/galaxyproject/galaxy/tree/dev/client/galaxy/scripts/mv...
And individual element types (a select box, for example) can be found here:
https://github.com/galaxyproject/galaxy/tree/dev/client/galaxy/scripts/mv...
Does this help?
On Fri, Jul 22, 2016 at 7:40 AM Peter Cock <p.j.a.cock(a)googlemail.com>
wrote:
> Sorry, I know relatively little about how Galaxy loads the tool XML
> files and turns this into the HTML pages. I've mostly searched
> the codebase with grep at the command line (also searching
> directly on GitHub works pretty well) trying to trace functionality
> when I was debugging something.
>
> Hopefully one of the Galaxy developers will be able to answer.
>
> Peter
>
>
> On Fri, Jul 22, 2016 at 7:29 AM, Katherine Beaulieu wrote:
> >
> > No I'm really asking about which files in Galaxy, will load those
> > parameters on the screen. I believe you were the one to give me a link
> to
> > adding a new parameter type in Galaxy via the password parameter, but I
> > haven't quite been able to implement that. The two files I have changed
> so
> > far are basic.py and form_builder.py but using these two files it still
> only
> > loads a text parameter.
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
> http://galaxyproject.org/search/mailinglists/
2383
days inactive
2383
days old
galaxy-dev@lists.galaxyproject.org
3 comments
3 participants
participants (3)
-
Dannon Baker -
Katherine Beaulieu -
Peter Cock