Hello
I am suddenly (after pulling a new version of galaxy) unable to install from the toolshed. The error is: Repository installation is not possible due to an invalid Galaxy URL: <b>None</b>. You may need to enable third-party cookies in your browser.
Any idea how I can fix this?
-----------------------------------------------------
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
-----------------------------------------------------
Hi Nancy,
what versions of Galaxy did you update from and to? Please check if you have cookies enabled in your browser.
Martin
On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide ide@cs.vassar.edu wrote:
Hello
I am suddenly (after pulling a new version of galaxy) unable to install from the toolshed. The error is: Repository installation is not possible due to an invalid Galaxy URL: <b>None</b>. You may need to enable third-party cookies in your browser.
Any idea how I can fix this?
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
Hello
Cookies were enabled—also I was updating from our galaxy instance for the LAPPS Grid, which is using version 19.01.
On Jul 31, 2019, at 6:34 PM, Martin Čech emulatorer@gmail.com wrote:
Hi Nancy,
what versions of Galaxy did you update from and to? Please check if you have cookies enabled in your browser.
Martin
On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide <ide@cs.vassar.edu mailto:ide@cs.vassar.edu> wrote: Hello
I am suddenly (after pulling a new version of galaxy) unable to install from the toolshed. The error is: Repository installation is not possible due to an invalid Galaxy URL: <b>None</b>. You may need to enable third-party cookies in your browser.
Any idea how I can fix this?
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu mailto:ide@cs.vassar.edu http://www.cs.vassar.edu/~ide http://www.cs.vassar.edu/~ide
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/ http://galaxyproject.org/search/
-----------------------------------------------------
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
-----------------------------------------------------
I see version 18.09 at http://galaxy.lappsgrid.org/ - are you trying to update this instance to 19.01? Do you have any local changes or issues when pulling new version?
On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide ide@cs.vassar.edu wrote:
Hello
Cookies were enabled—also I was updating from our galaxy instance for the LAPPS Grid, which is using version 19.01.
On Jul 31, 2019, at 6:34 PM, Martin Čech emulatorer@gmail.com wrote:
Hi Nancy,
what versions of Galaxy did you update from and to? Please check if you have cookies enabled in your browser.
Martin
On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide ide@cs.vassar.edu wrote:
Hello
I am suddenly (after pulling a new version of galaxy) unable to install from the toolshed. The error is: Repository installation is not possible due to an invalid Galaxy URL: <b>None</b>. You may need to enable third-party cookies in your browser.
Any idea how I can fix this?
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
Please look at jetstream.lappsgrid.org http://jetstream.lappsgrid.org/ — this is the development version I was using.
When I tried to pull from github it complained that some of my”untracked” files would be overwritten. I did a git stash but 3 files still were said to be overwritten, and I simply deleted those. The pull then went on uneventfully.
On Jul 31, 2019, at 6:53 PM, Martin Čech emulatorer@gmail.com wrote:
I see version 18.09 at http://galaxy.lappsgrid.org/ http://galaxy.lappsgrid.org/ - are you trying to update this instance to 19.01? Do you have any local changes or issues when pulling new version?
On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide <ide@cs.vassar.edu mailto:ide@cs.vassar.edu> wrote: Hello
Cookies were enabled—also I was updating from our galaxy instance for the LAPPS Grid, which is using version 19.01.
On Jul 31, 2019, at 6:34 PM, Martin Čech <emulatorer@gmail.com mailto:emulatorer@gmail.com> wrote:
Hi Nancy,
what versions of Galaxy did you update from and to? Please check if you have cookies enabled in your browser.
Martin
On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide <ide@cs.vassar.edu mailto:ide@cs.vassar.edu> wrote: Hello
I am suddenly (after pulling a new version of galaxy) unable to install from the toolshed. The error is: Repository installation is not possible due to an invalid Galaxy URL: <b>None</b>. You may need to enable third-party cookies in your browser.
Any idea how I can fix this?
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu mailto:ide@cs.vassar.edu http://www.cs.vassar.edu/~ide http://www.cs.vassar.edu/~ide
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/ http://galaxyproject.org/search/
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu mailto:ide@cs.vassar.edu http://www.cs.vassar.edu/~ide http://www.cs.vassar.edu/~ide
-----------------------------------------------------
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
-----------------------------------------------------
Would you like to come to the admin channel so we can troubleshoot this interactively? https://gitter.im/galaxyproject/admins
Martin
On Wed, Jul 31, 2019 at 12:56 PM Nancy Ide ide@cs.vassar.edu wrote:
Please look at jetstream.lappsgrid.org — this is the development version I was using.
When I tried to pull from github it complained that some of my”untracked” files would be overwritten. I did a git stash but 3 files still were said to be overwritten, and I simply deleted those. The pull then went on uneventfully.
On Jul 31, 2019, at 6:53 PM, Martin Čech emulatorer@gmail.com wrote:
I see version 18.09 at http://galaxy.lappsgrid.org/ - are you trying to update this instance to 19.01? Do you have any local changes or issues when pulling new version?
On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide ide@cs.vassar.edu wrote:
Hello
Cookies were enabled—also I was updating from our galaxy instance for the LAPPS Grid, which is using version 19.01.
On Jul 31, 2019, at 6:34 PM, Martin Čech emulatorer@gmail.com wrote:
Hi Nancy,
what versions of Galaxy did you update from and to? Please check if you have cookies enabled in your browser.
Martin
On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide ide@cs.vassar.edu wrote:
Hello
I am suddenly (after pulling a new version of galaxy) unable to install from the toolshed. The error is: Repository installation is not possible due to an invalid Galaxy URL: <b>None</b>. You may need to enable third-party cookies in your browser.
Any idea how I can fix this?
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
I very much appreciate the offer, but unfortunately I have to leave now. I am at a conference in Florence and tomorrow is our demo at a workshop, so I would be unable to do it tomorrow either, but anytime Friday would work if that is possible.
We are now having the same problem on the jetstream instance, but earlier we were able to install with the beta installer although not the regular one. However, just now on my local instance I tried to use the installer again, but I can’t get even to the repository (there is a message that the repository queue was loaded and has 0 elements). When I click on the “Galaxy Main Toolshed” button I can select one of the options but nothing happens. This is also true now on our jetstream instance.
On Jul 31, 2019, at 7:02 PM, Martin Čech emulatorer@gmail.com wrote:
Would you like to come to the admin channel so we can troubleshoot this interactively? https://gitter.im/galaxyproject/admins https://gitter.im/galaxyproject/admins
Martin
On Wed, Jul 31, 2019 at 12:56 PM Nancy Ide <ide@cs.vassar.edu mailto:ide@cs.vassar.edu> wrote: Please look at jetstream.lappsgrid.org http://jetstream.lappsgrid.org/ — this is the development version I was using.
When I tried to pull from github it complained that some of my”untracked” files would be overwritten. I did a git stash but 3 files still were said to be overwritten, and I simply deleted those. The pull then went on uneventfully.
On Jul 31, 2019, at 6:53 PM, Martin Čech <emulatorer@gmail.com mailto:emulatorer@gmail.com> wrote:
I see version 18.09 at http://galaxy.lappsgrid.org/ http://galaxy.lappsgrid.org/ - are you trying to update this instance to 19.01? Do you have any local changes or issues when pulling new version?
On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide <ide@cs.vassar.edu mailto:ide@cs.vassar.edu> wrote: Hello
Cookies were enabled—also I was updating from our galaxy instance for the LAPPS Grid, which is using version 19.01.
On Jul 31, 2019, at 6:34 PM, Martin Čech <emulatorer@gmail.com mailto:emulatorer@gmail.com> wrote:
Hi Nancy,
what versions of Galaxy did you update from and to? Please check if you have cookies enabled in your browser.
Martin
On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide <ide@cs.vassar.edu mailto:ide@cs.vassar.edu> wrote: Hello
I am suddenly (after pulling a new version of galaxy) unable to install from the toolshed. The error is: Repository installation is not possible due to an invalid Galaxy URL: <b>None</b>. You may need to enable third-party cookies in your browser.
Any idea how I can fix this?
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu mailto:ide@cs.vassar.edu http://www.cs.vassar.edu/~ide http://www.cs.vassar.edu/~ide
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/ http://galaxyproject.org/search/
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu mailto:ide@cs.vassar.edu http://www.cs.vassar.edu/~ide http://www.cs.vassar.edu/~ide
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu mailto:ide@cs.vassar.edu http://www.cs.vassar.edu/~ide http://www.cs.vassar.edu/~ide
-----------------------------------------------------
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
-----------------------------------------------------
This might have something to do with the client build. Could you try running 'make client` from Galaxy root folder?
Also what version of Galaxy are you experiencing this on, just 19.01 or did you use different locally? And how are you starting Galaxy?
Martin
On Wed, Jul 31, 2019 at 1:16 PM Nancy Ide ide@cs.vassar.edu wrote:
I very much appreciate the offer, but unfortunately I have to leave now. I am at a conference in Florence and tomorrow is our demo at a workshop, so I would be unable to do it tomorrow either, but anytime Friday would work if that is possible.
We are now having the same problem on the jetstream instance, but earlier we were able to install with the beta installer although not the regular one. However, just now on my local instance I tried to use the installer again, but I can’t get even to the repository (there is a message that the repository queue was loaded and has 0 elements). When I click on the “Galaxy Main Toolshed” button I can select one of the options but nothing happens. This is also true now on our jetstream instance.
On Jul 31, 2019, at 7:02 PM, Martin Čech emulatorer@gmail.com wrote:
Would you like to come to the admin channel so we can troubleshoot this interactively? https://gitter.im/galaxyproject/admins
Martin
On Wed, Jul 31, 2019 at 12:56 PM Nancy Ide ide@cs.vassar.edu wrote:
Please look at jetstream.lappsgrid.org — this is the development version I was using.
When I tried to pull from github it complained that some of my”untracked” files would be overwritten. I did a git stash but 3 files still were said to be overwritten, and I simply deleted those. The pull then went on uneventfully.
On Jul 31, 2019, at 6:53 PM, Martin Čech emulatorer@gmail.com wrote:
I see version 18.09 at http://galaxy.lappsgrid.org/ - are you trying to update this instance to 19.01? Do you have any local changes or issues when pulling new version?
On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide ide@cs.vassar.edu wrote:
Hello
Cookies were enabled—also I was updating from our galaxy instance for the LAPPS Grid, which is using version 19.01.
On Jul 31, 2019, at 6:34 PM, Martin Čech emulatorer@gmail.com wrote:
Hi Nancy,
what versions of Galaxy did you update from and to? Please check if you have cookies enabled in your browser.
Martin
On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide ide@cs.vassar.edu wrote:
Hello
I am suddenly (after pulling a new version of galaxy) unable to install from the toolshed. The error is: Repository installation is not possible due to an invalid Galaxy URL: <b>None</b>. You may need to enable third-party cookies in your browser.
Any idea how I can fix this?
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
I have to leave so can’t do this now, I will as soon as possible and let you know. Thanks again!
On Jul 31, 2019, at 7:24 PM, Martin Čech emulatorer@gmail.com wrote:
This might have something to do with the client build. Could you try running 'make client` from Galaxy root folder?
Also what version of Galaxy are you experiencing this on, just 19.01 or did you use different locally? And how are you starting Galaxy?
Martin
On Wed, Jul 31, 2019 at 1:16 PM Nancy Ide <ide@cs.vassar.edu mailto:ide@cs.vassar.edu> wrote: I very much appreciate the offer, but unfortunately I have to leave now. I am at a conference in Florence and tomorrow is our demo at a workshop, so I would be unable to do it tomorrow either, but anytime Friday would work if that is possible.
We are now having the same problem on the jetstream instance, but earlier we were able to install with the beta installer although not the regular one. However, just now on my local instance I tried to use the installer again, but I can’t get even to the repository (there is a message that the repository queue was loaded and has 0 elements). When I click on the “Galaxy Main Toolshed” button I can select one of the options but nothing happens. This is also true now on our jetstream instance.
On Jul 31, 2019, at 7:02 PM, Martin Čech <emulatorer@gmail.com mailto:emulatorer@gmail.com> wrote:
Would you like to come to the admin channel so we can troubleshoot this interactively? https://gitter.im/galaxyproject/admins https://gitter.im/galaxyproject/admins
Martin
On Wed, Jul 31, 2019 at 12:56 PM Nancy Ide <ide@cs.vassar.edu mailto:ide@cs.vassar.edu> wrote: Please look at jetstream.lappsgrid.org http://jetstream.lappsgrid.org/ — this is the development version I was using.
When I tried to pull from github it complained that some of my”untracked” files would be overwritten. I did a git stash but 3 files still were said to be overwritten, and I simply deleted those. The pull then went on uneventfully.
On Jul 31, 2019, at 6:53 PM, Martin Čech <emulatorer@gmail.com mailto:emulatorer@gmail.com> wrote:
I see version 18.09 at http://galaxy.lappsgrid.org/ http://galaxy.lappsgrid.org/ - are you trying to update this instance to 19.01? Do you have any local changes or issues when pulling new version?
On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide <ide@cs.vassar.edu mailto:ide@cs.vassar.edu> wrote: Hello
Cookies were enabled—also I was updating from our galaxy instance for the LAPPS Grid, which is using version 19.01.
On Jul 31, 2019, at 6:34 PM, Martin Čech <emulatorer@gmail.com mailto:emulatorer@gmail.com> wrote:
Hi Nancy,
what versions of Galaxy did you update from and to? Please check if you have cookies enabled in your browser.
Martin
On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide <ide@cs.vassar.edu mailto:ide@cs.vassar.edu> wrote: Hello
I am suddenly (after pulling a new version of galaxy) unable to install from the toolshed. The error is: Repository installation is not possible due to an invalid Galaxy URL: <b>None</b>. You may need to enable third-party cookies in your browser.
Any idea how I can fix this?
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu mailto:ide@cs.vassar.edu http://www.cs.vassar.edu/~ide http://www.cs.vassar.edu/~ide
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/ http://galaxyproject.org/search/
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu mailto:ide@cs.vassar.edu http://www.cs.vassar.edu/~ide http://www.cs.vassar.edu/~ide
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu mailto:ide@cs.vassar.edu http://www.cs.vassar.edu/~ide http://www.cs.vassar.edu/~ide
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu mailto:ide@cs.vassar.edu http://www.cs.vassar.edu/~ide http://www.cs.vassar.edu/~ide
-----------------------------------------------------
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
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galaxy-dev@lists.galaxyproject.org
-
Martin Čech -
Nancy Ide