Direct access the fastq files stored in galaxy server local storage
We have a local galaxy server. I know I can get data by ftp, upload directly from browser, or by a URL. If I have some fastq files in the Galaxy server local storage, is it possible to let Galaxy use it directly? Thanks, Fenglou
I don't think this is possible. Galaxy is designed to import data files and track their relationships and disk usage internally. You can import lots of files at once though.. see: http://wiki.galaxyproject.org/Admin/Data%20Libraries/Uploading%20Library%20F... Brad On Nov 20, 2012, at 3:49 PM, Fenglou Mao <fenglou@gmail.com<mailto:fenglou@gmail.com>> wrote: We have a local galaxy server. I know I can get data by ftp, upload directly from browser, or by a URL. If I have some fastq files in the Galaxy server local storage, is it possible to let Galaxy use it directly? Thanks, Fenglou ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Brad Langhorst langhorst@neb.com<mailto:langhorst@neb.com>
This is actually possible using data libraries. What you'd want to do is upload by filepath (described in the wiki page Brad linked, heading "Upload files from filesystem paths") and check the "No" box under "Copy data into Galaxy". -Dannon On Nov 20, 2012, at 4:13 PM, "Langhorst, Brad" <Langhorst@neb.com> wrote:
I don't think this is possible.
Galaxy is designed to import data files and track their relationships and disk usage internally.
You can import lots of files at once though.. see: http://wiki.galaxyproject.org/Admin/Data%20Libraries/Uploading%20Library%20F...
Brad On Nov 20, 2012, at 3:49 PM, Fenglou Mao <fenglou@gmail.com> wrote:
We have a local galaxy server. I know I can get data by ftp, upload directly from browser, or by a URL. If I have some fastq files in the Galaxy server local storage, is it possible to let Galaxy use it directly?
Thanks, Fenglou ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Brad Langhorst langhorst@neb.com
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (3)
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Dannon Baker -
Fenglou Mao -
Langhorst, Brad