Migrating Galaxy 14.02 to 15.05 : error with tool migration
I'm trying to make an update ... I' have done the following commands hg pull hg update -C latest_15.05 ./run.sh "Exception: Your database has version '118' but this code expects version '129'. Please backup your database and then migrate the schema by running 'sh manage_db.sh -c ./universe_wsgi.ini upgrade'." sh manage_db.sh -c ./universe_wsgi.ini upgrade sh ./scripts/migrate_tools/0012_tools.sh -c universe_wsgi.ini install_dependencies I have the following error and i don't know what it means : No handlers could be found for logger "galaxy.tools.data" Traceback (most recent call last): File "./scripts/migrate_tools/migrate_tools.py", line 21, in <module> app = MigrateToolsApplication( sys.argv[ 1 ] ) File "/Users/galaxy_dev_user/galaxy-dist/lib/tool_shed/galaxy_install/migrate/common.py", line 41, in __init__ self._configure_toolbox() File "/Users/galaxy_dev_user/galaxy-dist/lib/galaxy/config.py", line 748, in _configure_toolbox self.toolbox = tools.ToolBox( tool_configs, self.config.tool_path, self ) File "/Users/galaxy_dev_user/galaxy-dist/lib/galaxy/tools/__init__.py", line 106, in __init__ app=app, File "/Users/galaxy_dev_user/galaxy-dist/lib/galaxy/tools/toolbox/base.py", line 78, in __init__ self._load_tool_panel() File "/Users/galaxy_dev_user/galaxy-dist/lib/galaxy/tools/toolbox/base.py", line 312, in _load_tool_panel self.__add_tool_to_tool_panel( val, self._tool_panel, section=False ) File "/Users/galaxy_dev_user/galaxy-dist/lib/galaxy/tools/toolbox/base.py", line 251, in __add_tool_to_tool_panel tool = self._tools_by_id[ tool_id ] KeyError: 'tool_test' -- *Jean-Philippe Villemin *- Bioinformatics, Software Engineer - IURC (Institut Universitaire de Recherche Clinique) 641 avenue du Doyen Gaston Giraud 34093 Montpellier Cedex 5, France *Jean-Philippe.VILLEMIN@inserm.fr <Jean-Philippe.VILLEMIN@inserm.fr>*
participants (1)
-
Jean-Philippe Villemin