Hi Galaxy Dev Team. We are looking to put xgrid into the galaxy api as part of a summer project. We are hoping to add this functionality directly into galaxy so that all users can benefit. We are curious where to start investigating how galaxy interfaces with grids. We hope to integrate the functionality into galaxy so that a user can specify xgrid in the config file and galaxy will deal with the rest of the interfacing with xgrid. This would of course only be avaliable to MACOSX galaxy installs. Cheers James. Research Assistant Department of Biochemistry University Of Otago
Galaxy interfaces with batch systems through a job runner. Several implementations are currently available: https://bitbucket.org/galaxy/galaxy-central/src/eea034b7cc625fa294fdd1e071d9... Before implementing a new runner for xgrid I would see if there is a way for xgrid to support the DRMAA API, in which case you can use the DRMAA runner. -- James Taylor, Assistant Professor, Biology/CS, Emory University On Thu, Nov 22, 2012 at 9:47 PM, James Boocock <smilefreak2010@gmail.com> wrote:
Hi Galaxy Dev Team.
We are looking to put xgrid into the galaxy api as part of a summer project. We are hoping to add this functionality directly into galaxy so that all users can benefit.
We are curious where to start investigating how galaxy interfaces with grids.
We hope to integrate the functionality into galaxy so that a user can specify xgrid in the config file and galaxy will deal with the rest of the interfacing with xgrid.
This would of course only be avaliable to MACOSX galaxy installs.
Cheers James. Research Assistant Department of Biochemistry University Of Otago
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XGrid is a dead-end technology. It has been removed from OS X starting with Mountain Lion (10.8). -- Glen L. Beane Senior Software Engineer The Jackson Laboratory (207) 288-6153 On 11/22/12 9:47 PM, "James Boocock" <smilefreak2010@gmail.com> wrote:
Hi Galaxy Dev Team.
We are looking to put xgrid into the galaxy api as part of a summer project. We are hoping to add this functionality directly into galaxy so that all users can benefit.
We are curious where to start investigating how galaxy interfaces with grids.
We hope to integrate the functionality into galaxy so that a user can specify xgrid in the config file and galaxy will deal with the rest of the interfacing with xgrid.
This would of course only be avaliable to MACOSX galaxy installs.
Cheers James. Research Assistant Department of Biochemistry University Of Otago
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
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participants (3)
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Glen Beane -
James Boocock -
James Taylor