I'm not quite sure what you mean by a "code file", but if you mean using the <configfile> tag, here's an example: https://github.com/peterjc/galaxy_mira/blob/master/tools/mira4_0/mira4_de_no... I am using a Cheetah syntax for loop to access each entry in a repeat parameter. Peter On Thu, Sep 1, 2016 at 12:58 PM, Katherine Beaulieu <katherine.beaulieu014@gmail.com> wrote:

Hello Galaxy Community, I was wondering if anyone had ever come across a situation where they have had to pass the contents of a repeat parameter to a code file in a Galaxy tool config? Is there any way to do this? Katherine

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