Hello Galaxy Community, I was wondering if anyone had ever come across a situation where they have had to pass the contents of a repeat parameter to a code file in a Galaxy tool config? Is there any way to do this? Katherine
I'm not quite sure what you mean by a "code file", but if you mean using the <configfile> tag, here's an example:
https://github.com/peterjc/galaxy_mira/blob/master/tools/mira4_0/mira4_de_no...
I am using a Cheetah syntax for loop to access each entry in a repeat parameter.
Peter
On Thu, Sep 1, 2016 at 12:58 PM, Katherine Beaulieu katherine.beaulieu014@gmail.com wrote:
Hello Galaxy Community, I was wondering if anyone had ever come across a situation where they have had to pass the contents of a repeat parameter to a code file in a Galaxy tool config? Is there any way to do this? Katherine
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Hi Katherine,
have a look at this one using repeats:
https://github.com/bgruening/galaxytools/blob/master/tools/deseq2/deseq_help...
Ciao, Bjoern
Am 01.09.2016 um 13:58 schrieb Katherine Beaulieu:
Hello Galaxy Community, I was wondering if anyone had ever come across a situation where they have had to pass the contents of a repeat parameter to a code file in a Galaxy tool config? Is there any way to do this? Katherine
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