Egg build failed for bx_python 0.7.2
I have sensitive clinical data and would like to run Galaxy on a local production server. While creating/acquiring the required Python eggs to start the server for the first time using the sh run.sh command I got the following error message. How should I proceed? gcc-4.0 -fno-strict-aliasing -fno-common -dynamic -arch ppc -arch i386 -g -O2 -DNDEBUG -g -O3 -Isrc/kent -Isrc -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c lib/bx/bitset.c -o build/temp.macosx-10.3-fat-2.7/lib/bx/bitset.o unable to execute gcc-4.0: No such file or directory error: command 'gcc-4.0' failed with exit status 1 Traceback (most recent call last): File "scripts/scramble.py", line 50, in <module> egg.scramble() File "/Users/rafaelguerrero-preston/galaxy-dist/lib/galaxy/eggs/scramble.py", line 57, in scramble self.run_scramble_script() File "/Users/rafaelguerrero-preston/galaxy-dist/lib/galaxy/eggs/scramble.py", line 206, in run_scramble_script raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( sys._getframe().f_code.co_name, self.name, self.version ) ) galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for bx_python 0.7.2
Are you sure you need to build your own eggs? Outside a few cluster-specific eggs, this is rarely the case (and not for bx-python, to my knowledge). The first thing I'd check is whether or not removing the eggs directory (to force a clean start from whatever egg situation you have now) from Galaxy and just running 'sh run.sh' will fetch the correct eggs for you automatically, without requiring local compilation. This *should* automatically fetch pre-scrambled eggs from our servers correct for your architecture. -Dannon On Tue, Nov 25, 2014 at 9:48 AM, Rafael Guerrero-Preston <rguerre3@jhmi.edu> wrote:
I have sensitive clinical data and would like to run Galaxy on a local production server. While creating/acquiring the required Python eggs to start the server for the first time using the *sh run.sh* command I got the following error message. How should I proceed?
gcc-4.0 -fno-strict-aliasing -fno-common -dynamic -arch ppc -arch i386 -g -O2 -DNDEBUG -g -O3 -Isrc/kent -Isrc -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c lib/bx/bitset.c -o build/temp.macosx-10.3-fat-2.7/lib/bx/bitset.o
unable to execute gcc-4.0: No such file or directory
error: command 'gcc-4.0' failed with exit status 1
Traceback (most recent call last):
File "scripts/scramble.py", line 50, in <module>
egg.scramble()
File "/Users/rafaelguerrero-preston/galaxy-dist/lib/galaxy/eggs/scramble.py", line 57, in scramble
self.run_scramble_script()
File "/Users/rafaelguerrero-preston/galaxy-dist/lib/galaxy/eggs/scramble.py", line 206, in run_scramble_script
raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( sys._getframe().f_code.co_name, self.name, self.version ) )
galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for bx_python 0.7.2
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participants (2)
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Dannon Baker -
Rafael Guerrero-Preston