Hi all,
I have added some tools to my local install of Galaxy. To get to my final results I have to do a lot of steps. When I try to run every step separately it turns out to work out fine. But when I try to run all steps at once with a workflow I get the following error message.
OperationalError: (OperationalError) database is locked u'UPDATE dataset SET update_time=?, state=? WHERE dataset.id = ?' ['2012-07-02 11:34:48.135419', 'queued', 529]
I have noticed that the processes eat a lot of my computer resources. Other than that I have no clue what the problem could be.
Any tips are appreciated.
Kind regards, Jaap van der Heijden
Hi Jaap
are you using 'SQLite', if so, I recommend to switch to 'PostgreSQL', see: http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server/#Swit...
Regards, Hans
On 07/02/2012 02:26 PM, J.W.F.van_der_Heijden@lumc.nl wrote:
Hi all,
I have added some tools to my local install of Galaxy. To get to my final results I have to do a lot of steps. When I try to run every step separately it turns out to work out fine. But when I try to run all steps at once with a workflow I get the following error message.
|OperationalError: (OperationalError) database is locked u'UPDATE dataset SET update_time=?, state=? WHERE dataset.id = ?' ['2012-07-02 11:34:48.135419', 'queued', 529]
I have noticed that the processes eat a lot of my computer resources. Other than that I have no clue what the problem could be.
Any tips are appreciated.
Kind regards, Jaap van der Heijden |
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Hans-Rudolf Hotz -
J.W.F.van_der_Heijden＠lumc.nl