liftOver files come from the UCSC genome browser, derived from
A variety of tools can create nib files from fasta, however we prefer
the use of the twoBit format now, which can be created using
faToTwoBit from the UCSC utilities.
James Taylor, Assistant Professor, Biology/CS, Emory University
On Sat, Jul 6, 2013 at 9:19 PM, Perez, Ricardo <ricky_pz2(a)neo.tamu.edu> wrote:
When I rsync files from let say the following command:
rsync -avzP rsync://datacache.g2.bx.psu.edu/indexes/dm3
The system will sync files that are related to genome aligments, liftover, and nibs.
How did the Galaxy team generated this files?
The reason I ask is because I would lather will like to generate similar files to custom
genomes to be used in galaxy.
Thank you for your time,
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