Hi Oliver, Excuse my ignorance, but aren't these tools redundant with the "operate on genomic intervals" tools already in Galaxy? The author even states that they are inspired by Galaxy's similar tools (and was perhaps unaware that Galaxy's tools are all available as command line tools as part of http://bitbucket.org/james_taylor/bx-python/). Thanks, James On Dec 10, 2009, at 6:34 PM, Oliver Hofmann wrote:

Hi!

We've been looking into integrating Arron Quinlan's excellent [BEDTools](http://people.virginia.edu/~arq5x/bedtools.html) into Galaxy. Before duplicating work -- did someone already create bindings for the command line versions? If not it will get added to our todo list.

Best,

Oliver

-- Research Associate Department of Biostatistics Associate Director Bioinformatics Core Harvard School of Public Health Skype: ohofmann Phone: +1 (617) 365 0984 _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev

-- jt James Taylor Assistant Professor Department of Biology Department of Mathematics & Computer Science Emory University