I hope this is the correct place to submit this problem. I'm using Galaxy main and there appears to be an error in the calculation of the disk space I'm using.
I was using 7% of the allowed 250GB and then ran a series of jobs that produced files of ~200GB each. I deleted all of those jobs (most of which hadn't started execution), and then went back and deleted each one permanently, and my usage went back down to 7%. I requested a few jobs which should have produced smaller files, and they paused straight after starting. When I checked back, I was suddenly apparently using 597GB of disk space despite the size on disk of each of my histories adding up to <25GB. I've permanently deleted everything created since the initial problems and still my usage is recorded as 597GB. On Trello, there's a bug report that currently running jobs in deleted histories don't stop execution. Possibly my problem is due to the same bug, despite all the tasks being purged and not recoverable.
I cannot do anything on Galaxy until my recorded disk space usage dips back under 100%. Can anyone help?
Many thanks, Jessica Gaunt
Its better to post usage questions at https://biostar.usegalaxy.org/
best, ido
On Apr 28, 2014, at 2:50 PM, Jess Gaunt jessica.gaunt@bristol.ac.uk wrote:
I hope this is the correct place to submit this problem. I'm using Galaxy main and there appears to be an error in the calculation of the disk space I'm using.
I was using 7% of the allowed 250GB and then ran a series of jobs that produced files of ~200GB each. I deleted all of those jobs (most of which hadn't started execution), and then went back and deleted each one permanently, and my usage went back down to 7%. I requested a few jobs which should have produced smaller files, and they paused straight after starting. When I checked back, I was suddenly apparently using 597GB of disk space despite the size on disk of each of my histories adding up to <25GB. I've permanently deleted everything created since the initial problems and still my usage is recorded as 597GB. On Trello, there's a bug report that currently running jobs in deleted histories don't stop execution. Possibly my problem is due to the same bug, despite all the tasks being purged and not recoverable.
I cannot do anything on Galaxy until my recorded disk space usage dips back under 100%. Can anyone help?
Many thanks, Jessica Gaunt ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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Dear Ido, Thank you for your response, but I don't have a usage question. I've read through all of the information on managing datasets and it seems to be a calculation error on Galaxy. I'm hoping that an admin can recalculate my disk usage as described here ( https://wiki.galaxyproject.org/Admin/DiskQuotas?action=show&redirect=Adm...) and this will fix the problem. (As far as I can tell, this is something I can't do myself, so apologies if I'm mistaken on this.)
Regards, Jess
On 28 April 2014 15:58, Ido Tamir tamir@imp.ac.at wrote:
Its better to post usage questions at https://biostar.usegalaxy.org/
best, ido
On Apr 28, 2014, at 2:50 PM, Jess Gaunt jessica.gaunt@bristol.ac.uk wrote:
I hope this is the correct place to submit this problem. I'm using
Galaxy main and there appears to be an error in the calculation of the disk space I'm using.
I was using 7% of the allowed 250GB and then ran a series of jobs that
produced files of ~200GB each. I deleted all of those jobs (most of which hadn't started execution), and then went back and deleted each one permanently, and my usage went back down to 7%. I requested a few jobs which should have produced smaller files, and they paused straight after starting. When I checked back, I was suddenly apparently using 597GB of disk space despite the size on disk of each of my histories adding up to <25GB. I've permanently deleted everything created since the initial problems and still my usage is recorded as 597GB. On Trello, there's a bug report that currently running jobs in deleted histories don't stop execution. Possibly my problem is due to the same bug, despite all the tasks being purged and not recoverable.
I cannot do anything on Galaxy until my recorded disk space usage dips
back under 100%. Can anyone help?
Many thanks, Jessica Gaunt ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Jess,
I've recalculated your disk usage, you should be good to go now.
-Dannon
On Mon, Apr 28, 2014 at 11:51 AM, Jess Gaunt jessica.gaunt@bristol.ac.ukwrote:
Dear Ido, Thank you for your response, but I don't have a usage question. I've read through all of the information on managing datasets and it seems to be a calculation error on Galaxy. I'm hoping that an admin can recalculate my disk usage as described here ( https://wiki.galaxyproject.org/Admin/DiskQuotas?action=show&redirect=Adm...) and this will fix the problem. (As far as I can tell, this is something I can't do myself, so apologies if I'm mistaken on this.)
Regards, Jess
On 28 April 2014 15:58, Ido Tamir tamir@imp.ac.at wrote:
Its better to post usage questions at https://biostar.usegalaxy.org/
best, ido
On Apr 28, 2014, at 2:50 PM, Jess Gaunt jessica.gaunt@bristol.ac.uk wrote:
I hope this is the correct place to submit this problem. I'm using
Galaxy main and there appears to be an error in the calculation of the disk space I'm using.
I was using 7% of the allowed 250GB and then ran a series of jobs that
produced files of ~200GB each. I deleted all of those jobs (most of which hadn't started execution), and then went back and deleted each one permanently, and my usage went back down to 7%. I requested a few jobs which should have produced smaller files, and they paused straight after starting. When I checked back, I was suddenly apparently using 597GB of disk space despite the size on disk of each of my histories adding up to <25GB. I've permanently deleted everything created since the initial problems and still my usage is recorded as 597GB. On Trello, there's a bug report that currently running jobs in deleted histories don't stop execution. Possibly my problem is due to the same bug, despite all the tasks being purged and not recoverable.
I cannot do anything on Galaxy until my recorded disk space usage dips
back under 100%. Can anyone help?
Many thanks, Jessica Gaunt ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
galaxy-dev@lists.galaxyproject.org
-
Dannon Baker -
Ido Tamir -
Jess Gaunt