Hi Carlos See: galaxy_dist/lib/galaxy/util/__init__.py for characters that are allowed but need to be escaped Regards, Hans On 06/28/2012 03:14 PM, Carlos Reyes wrote:

Hello,

I have never used this support route before however I have a question about a Galaxy wrapper that I made for a python tool. I have a text input box connected to a $command_line_spot in an attempt to run a string such as "IN[4]=='gene'" on the command line (quotations included) through text box input. When I put "IN[4]=='gene'" directly in the command line it runs fine, however when I put it through my text box it puts the string on the command line as __dq__IN__ob__4__cb__==__sq__gene__sq____dq__ "IN[4]=='gene'" instead of just "IN[4]=='gene'". Sorry if this email makes no sense whatsoever, it is very out of context but I thought I'd ask.

Note: I am running the latest release of galaxy which I pulled from mercurial.

Thanks, Carlos

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