Any comments on this? http://testtoolshed.g2.bx.psu.edu/view/saketkc/package_pycurl_7_19_3_1 On 17 April 2014 19:54, Saket Choudhary <saketkc(a)gmail.com&gt; wrote: > My attempt to 'package' pycurl on testtoolshed fails with the following error: > > src/pycurl.c: In function ‘do_multi_info_read’: src/pycurl.c:3549:15: > warning: call to ‘_curl_easy_getinfo_err_string’ declared with > attribute warning: curl_easy_getinfo expects a pointer to char * for > this info [enabled by default] src/pycurl.c: In function > ‘do_curl_getinfo’: src/pycurl.c:2888:19: warning: call to > ‘_curl_easy_getinfo_err_curl_slist’ declared with attribute warning: > curl_easy_getinfo expects a pointer to struct curl_slist * for this > info [enabled by default] error: could not create > '/usr/local/share/doc': Permission denied > > > A local install worked fine. Is this because of libcurl-devel missing > on toolshed instance? ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/

Hi Bjoern, There is no script installed, I generally just do this on my local system $ python setup.py build --with-ssl $ python setup.py install The documentation mentions the following options: PycURL Unix options: --curl-config=/path/to/curl-config use specified curl-config binary --openssl-dir=/path/to/openssl/dir path to OpenSSL headers and libraries --with-ssl libcurl is linked against OpenSSL --with-gnutls libcurl is linked against GnuTLS --with-nss libcurl is linked against NSS Saket On 29 April 2014 23:31, Björn Grüning <bjoern.gruening(a)gmail.com&gt; wrote: > Hi Saket, > > is there any script installed with that package? --install-scripts may be > needed. Also I'm wondering if there is no dependency on curl-lib? > > Cheers, > Bjoern > > Am 29.04.2014 19:16, schrieb Saket Choudhary: >> >> Any comments on this? >> http://testtoolshed.g2.bx.psu.edu/view/saketkc/package_pycurl_7_19_3_1 >> >> On 17 April 2014 19:54, Saket Choudhary <saketkc(a)gmail.com&gt; wrote: >>> >>> My attempt to 'package' pycurl on testtoolshed fails with the following >>> error: >>> >>> src/pycurl.c: In function ‘do_multi_info_read’: src/pycurl.c:3549:15: >>> warning: call to ‘_curl_easy_getinfo_err_string’ declared with >>> attribute warning: curl_easy_getinfo expects a pointer to char * for >>> this info [enabled by default] src/pycurl.c: In function >>> ‘do_curl_getinfo’: src/pycurl.c:2888:19: warning: call to >>> ‘_curl_easy_getinfo_err_curl_slist’ declared with attribute warning: >>> curl_easy_getinfo expects a pointer to struct curl_slist * for this >>> info [enabled by default] error: could not create >>> '/usr/local/share/doc': Permission denied >>> >>> >>> A local install worked fine. Is this because of libcurl-devel missing >>> on toolshed instance? >> >> >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> http://lists.bx.psu.edu/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ >> > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/

Thanks Greg & Bjoern, I get your point now. I will reconfigure my tool to take into account the other dependencies. Thanks once again, Saket On 30 April 2014 02:30, Greg Von Kuster <greg(a)bx.psu.edu&gt; wrote: > Hello Saket, > > I'm not a system-level expert, so please ignore my attempt at helping if it > is incorrect. Your recipe for installing and compiling pycurl may be > assuming that certain dependencies exist in the Galaxy environment into > which it is being installed for testing, but they do not. Galaxy tools and > tool dependency recipes can only assume the following dependencies are > available in the Galaxy environment into which they will be installed (this > list is available in the Tool Shed wiki on this page: > https://wiki.galaxyproject.org/InstallAndTestCertification). In your case, > a recipe should probably also be installing the libcurl-devel package (and > possibly others??). > > Recipes need to be created for dependencies that are not on the following > list, and then relationships can be defined between repositories that > contain them and repositories that contain tools that depend upon them. The > reason the following list is short is because starting up a new Galaxy > instance should be as simple as cloning it and starting it up with run.sh. > > autoconf > automake > autotools-dev > build-essential > cmake > git-core > libatlas-base-dev > libblas-dev > liblapack-dev > libc6-dev > mercurial > python2.6 > python2.6-dev > pkg-config > subversion > python-dev > python-pip > > > Greg Von Kuster > > > On Apr 29, 2014, at 4:34 PM, Saket Choudhary <saketkc(a)gmail.com&gt; wrote: > > Hi Bjoern, > > There is no script installed, I generally just do this on my local system > $ python setup.py build --with-ssl > $ python setup.py install > > The documentation mentions the following options: > PycURL Unix options: > --curl-config=/path/to/curl-config use specified curl-config binary > --openssl-dir=/path/to/openssl/dir path to OpenSSL headers and libraries > --with-ssl libcurl is linked against OpenSSL > --with-gnutls libcurl is linked against GnuTLS > --with-nss libcurl is linked against NSS > > > Saket > > On 29 April 2014 23:31, Björn Grüning <bjoern.gruening(a)gmail.com&gt; wrote: > > Hi Saket, > > is there any script installed with that package? --install-scripts may be > needed. Also I'm wondering if there is no dependency on curl-lib? > > Cheers, > Bjoern > > Am 29.04.2014 19:16, schrieb Saket Choudhary: > > > Any comments on this? > http://testtoolshed.g2.bx.psu.edu/view/saketkc/package_pycurl_7_19_3_1 > > On 17 April 2014 19:54, Saket Choudhary <saketkc(a)gmail.com&gt; wrote: > > > My attempt to 'package' pycurl on testtoolshed fails with the following > error: > > src/pycurl.c: In function ‘do_multi_info_read’: src/pycurl.c:3549:15: > warning: call to ‘_curl_easy_getinfo_err_string’ declared with > attribute warning: curl_easy_getinfo expects a pointer to char * for > this info [enabled by default] src/pycurl.c: In function > ‘do_curl_getinfo’: src/pycurl.c:2888:19: warning: call to > ‘_curl_easy_getinfo_err_curl_slist’ declared with attribute warning: > curl_easy_getinfo expects a pointer to struct curl_slist * for this > info [enabled by default] error: could not create > '/usr/local/share/doc': Permission denied > > > A local install worked fine. Is this because of libcurl-devel missing > on toolshed instance? > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > >