On Fri, Aug 22, 2014 at 8:18 PM, Marija Atanaskovic
I don¹t know what the stdout and stderr information was. I click on it but
nothing comes up.
I installed from the main toolshed:
Yes, I did use the test toolshed for Mira 4.
If stdout and stderr are empty, this is consistent with MIRA never
even starting (as suggested by the next bit of information below).
On Fri, Aug 22, 2014 at 8:20 PM, Marija Atanaskovic
This is the error in history under MIRA log:
An error occurred with this dataset:Unable to run job due to a
misconfiguration of the Galaxy job running system. Please contact a site
That suggests your Galaxy job runner is not properly configured,
and MIRA itself was never started. Are you the site administrator?
Are other Galaxy tools working? Are other Galaxy tools installed
from the ToolShed working?
On Fri, Aug 22, 2014 at 8:22 PM, Marija Atanaskovic
One more thing. The data that I am trying to analyse are fastq files of
Ion Torrent reads. I have used them with other assemblers e.g., velvet,
I have not personally used Ion Torrent, but that ought to be fine.
P.S. You forgot to CC the mailing list.