Opening Galaxy with a specified History Name -- how to convert the clear text history id to an encrypted id?
Good afternoon John, Your patch works great for opening Galaxy with a specific History, but one needs to know the encrypted version of the History ID. How does one obtain that, or convert the clear text version to an encrypted id? Thanks again, Bob
From: John Chilton jmchilton@gmail.comCc: galaxy-dev@lists.galaxyproject.orgSent: Mon, 14 Sep 2015 13:44:01 -0000 (UTC)Subject: Re: [galaxy-dev] Opening Galaxy with a specified History Name It looks like you can specify a tool or workflow to jump straight tobut not a history.
The following pull request(https://github.com/galaxyproject/galaxy/pull/725) extends this functionality to include histories. You will need the encoded history ID as returned by the workflow andhistory API to use this – e.g. on my test laptop the following URLworked to switch histories after applying the patch in the pullrequest – http://localhost:8080/root?history_id=1cd8e2f6b131e892.
Hope this helps,-John
On Thu, Sep 10, 2015 at 6:23 PM, rbrown1422@comcast.net wrote:> Good afternoon John,> We are running a self defined workflow in Galaxy and have a unique history> for each dataset we are working on. This workflow is run repeatedly to> tackle an entire dataset, requiring the user the use Galaxy multiple times> with other steps outside of Galaxy.> The user enters via a web app, and we would like to bring the user into> their Galaxy account with the correct history loaded for the dataset they> are trying to process.> Is there a way to specify the history when starting Galaxy, not just use the> last one from the previous session?> Thanks,> Bob> ----- Original Message -----> From: John Chilton jmchilton@gmail.com> To: rbrown1422@comcast.net> Cc: galaxy-dev@lists.galaxyproject.org> Sent: Wed, 09 Sep 2015 15:32:39 -0000 (UTC)> Subject: Re: [galaxy-dev] Opening Galaxy with a specified History Name> Can you please elaborate on what will be driving this? You can> certainly create a history and run jobs with the API. It sounds like> what you want though is an external web application or something that> will have a link to create a new history for the current users's> session. I'm not sure this is currently supported since this wouldn't> involve the API but it can probably be hacked together for your> application.> -John> On Sat, Sep 5, 2015 at 8:17 PM, rbrown1422@comcast.net wrote:>> To all,>> I would like to open a Galaxy session programmatically (schedule Galaxy>> with>> their user name and password) and have the Galaxy session open with a>> history name I specify. So if there was work done previously under that>> history name, those output files will appear in the history window -->> without the user having to change the history name manually to see them.>> Is this possible?>> Thanks,>> bob>>>> ___________________________________________________________>> Please keep all replies on the list by using "reply all">> in your mail client. To manage your subscriptions to this>> and other Galaxy lists, please use the interface at:>> https://lists.galaxyproject.org/%3E%3E%3E%3E To search Galaxy mailing lists use the unified search at:>> http://galaxyproject.org/search/mailinglists/
I would check out the history API documentation - if you find the history via the API the 'id' attribute is the encoded ID you need.
Using bioblend client:
https://bioblend.readthedocs.org/en/latest/api_docs/galaxy/docs.html
Using REST API directly:
http://galaxy.readthedocs.org/en/master/api/quickstart.html
-John
On Thu, Oct 22, 2015 at 5:37 PM, rbrown Brown rbrown@insilico.us.com wrote:
Good afternoon John,
Your patch works great for opening Galaxy with a specific History, but one needs to know the encrypted version of the History ID.
How does one obtain that, or convert the clear text version to an encrypted id?
Thanks again,
Bob
----- Forwarded Message ----- From: John Chilton jmchilton@gmail.com Cc: galaxy-dev@lists.galaxyproject.org Sent: Mon, 14 Sep 2015 13:44:01 -0000 (UTC) Subject: Re: [galaxy-dev] Opening Galaxy with a specified History Name It looks like you can specify a tool or workflow to jump straight to but not a history.
The following pull request(https://github.com/galaxyproject/galaxy/pull/725) extends this functionality to include histories. You will need the encoded history ID as returned by the workflow and history API to use this – e.g. on my test laptop the following URL worked to switch histories after applying the patch in the pull request – http://localhost:8080/root?history_id=1cd8e2f6b131e892.
Hope this helps, -John
On Thu, Sep 10, 2015 at 6:23 PM, rbrown1422@comcast.net wrote:
Good afternoon John, We are running a self defined workflow in Galaxy and have a unique history for each dataset we are working on. This workflow is run repeatedly to tackle an entire dataset, requiring the user the use Galaxy multiple times with other steps outside of Galaxy. The user enters via a web app, and we would like to bring the user into their Galaxy account with the correct history loaded for the dataset they are trying to process. Is there a way to specify the history when starting Galaxy, not just use the last one from the previous session? Thanks, Bob ----- Original Message ----- From: John Chilton jmchilton@gmail.com To: rbrown1422@comcast.net Cc: galaxy-dev@lists.galaxyproject.org Sent: Wed, 09 Sep 2015 15:32:39 -0000 (UTC) Subject: Re: [galaxy-dev] Opening Galaxy with a specified History Name Can you please elaborate on what will be driving this? You can certainly create a history and run jobs with the API. It sounds like what you want though is an external web application or something that will have a link to create a new history for the current users's session. I'm not sure this is currently supported since this wouldn't involve the API but it can probably be hacked together for your application. -John On Sat, Sep 5, 2015 at 8:17 PM, rbrown1422@comcast.net wrote:
To all, I would like to open a Galaxy session programmatically (schedule Galaxy with their user name and password) and have the Galaxy session open with a history name I specify. So if there was work done previously under that history name, those output files will appear in the history window -- without the user having to change the history name manually to see them. Is this possible? Thanks, bob
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
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