details:
http://www.bx.psu.edu/hg/galaxy/rev/7120c4848270
changeset: 3549:7120c4848270
user: Dan Blankenberg <dan(a)bx.psu.edu>
date: Mon Mar 22 11:06:40 2010 -0400
description:
Make boxplot tool respect exit codes when determining job errors: makes e.g. 'Could
not find/open font when opening font "arial", using internal non-scalable
font' a non-fatal warning. Add version attribute to gnuplot requirement tag.
diffstat:
tools/plotting/boxplot.xml | 5 +++--
1 files changed, 3 insertions(+), 2 deletions(-)
diffs (22 lines):
diff -r ff39f033ce68 -r 7120c4848270 tools/plotting/boxplot.xml
--- a/tools/plotting/boxplot.xml Fri Mar 19 15:09:13 2010 -0400
+++ b/tools/plotting/boxplot.xml Mon Mar 22 11:06:40 2010 -0400
@@ -1,8 +1,8 @@
<tool id="qual_stats_boxplot" name="Boxplot"
version="1.0.0">
<description>of quality statistics</description>
- <command>gnuplot < '$gnuplot_commands' >
'$output_file'</command>
+ <command>gnuplot < '$gnuplot_commands' 2>&1 || echo
"Error running gnuplot." >&2</command>
<requirements>
- <requirement type="binary">gnuplot</requirement>
+ <requirement type="binary" version="gnuplot 4.2 patchlevel
2">gnuplot</requirement>
</requirements>
<inputs>
<param name="input_file" type="data"
format="tabular" label="Quality Statistics File"/>
@@ -30,6 +30,7 @@
</inputs>
<configfiles>
<configfile name="gnuplot_commands">
+set output '$output_file'
set term png size ${graph_size}
set boxwidth 0.8
set key right tmargin