Hi,
I'm pretty new to Galaxy, at least to this side. I'm sorry to bother you with my issue, that, I read, was quite extensively discussed previously, but even if I think to have followed correctly the instruction and further suggestions, I'm still not able to overcome the problem.
I'm trying to install a local instance of Galaxy on my MAC (OS X10.6.8) My Python version is 2.6.1 and I just installed Mercurial 2.0.2 for MacOS X 10.6.
FYI
$ python --version Python 2.6.1
$ echo $PATH /Users/myName/System/Library/Frameworks/Python.framework/Versions/2.6/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
When I try to run the run.sh I get the error attached below. Can you envisage a possible reason why I'm getting this error? Sorry for the naive admission, but from the error message I'm not even capable to understand which are the "missing eggs"...
If I'd have ignored a previous post with the solution, I apologize in advance. Thank you a lot for your attention. Lu
------------------ $ sh run.sh Some eggs are out of date, attempting to fetch... Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 30, in <module> c.resolve() # Only fetch eggs required by the config File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, in resolve egg.resolve() File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 195, in resolve return self.version_conflict( e.args[0], e.args[1] ) File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 226, in version_conflict r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env, egg.fetch ) File "/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/pkg_resources.py", line 518, in resolve raise DistributionNotFound(req) # XXX put more info here pkg_resources.DistributionNotFound: numpy==1.6.0 Fetch failed.
ERRATA CORRIGE: sorry :(
$ echo $PATH /System/Library/Frameworks/Python.framework/Versions/2.6/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin
-------- Original Message -------- Subject: [galaxy-dev] Some eggs are out of date...Fetch failed (Mac OS X 10.6) Date: Tue, 24 Jan 2012 22:06:42 +0100
Hi,
I'm pretty new to Galaxy, at least to this side. I'm sorry to bother you with my issue, that, I read, was quite extensively discussed previously, but even if I think to have followed correctly the instruction and further suggestions, I'm still not able to overcome the problem.
I'm trying to install a local instance of Galaxy on my MAC (OS X10.6.8) My Python version is 2.6.1 and I just installed Mercurial 2.0.2 for MacOS X 10.6.
FYI
$ python --version Python 2.6.1
--->> wrong <<---see above $ echo $PATH /Users/myName/System/Library/Frameworks/Python.framework/Versions/2.6/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
When I try to run the run.sh I get the error attached below. Can you envisage a possible reason why I'm getting this error? Sorry for the naive admission, but from the error message I'm not even capable to understand which are the "missing eggs"...
If I'd have ignored a previous post with the solution, I apologize in advance. Thank you a lot for your attention. Lu
------------------ $ sh run.sh Some eggs are out of date, attempting to fetch... Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 30, in <module> c.resolve() # Only fetch eggs required by the config File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, in resolve egg.resolve() File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 195, in resolve return self.version_conflict( e.args[0], e.args[1] ) File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 226, in version_conflict r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env, egg.fetch ) File "/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/pkg_resources.py", line 518, in resolve raise DistributionNotFound(req) # XXX put more info here pkg_resources.DistributionNotFound: numpy==1.6.0 Fetch failed.
Hi, just an update and a clarification:
1. clarification: I hope it was clear that my ERRATA notification didn't also mean that I resolved the error...
2. update: I repeated exactly the same installation procedure I described in the first email on another identical MAC (same OS X version, same python version, same Mercurial version) and I succeeded in the installation!!! (unfortunately, this MAC is my personal one, therefore I have yet to solve the issue in the original machine)
The only different element I can envisage that may have had an impact on the failure of first installation is the path where I cloned the galaxy-dist folder (format/position/deepness?): do you think it could be an issue? alternatively can you imagine other possible reasons? could an outdated GCC compiler be another possible source of problems?
Thank you again for your kind attention. Lu
Da: Lucilla Luzi lucilla.luzi@ifom-ieo-campus.it Data: 24 gennaio 2012 22.16.46 GMT+01.00 A: galaxy-dev@lists.bx.psu.edu Oggetto: [galaxy-dev] Fwd: Some eggs are out of date...Fetch failed (Mac OS X 10.6) ERRATA CORRIGE Rispondi a: lucilla.luzi@ifom-ieo-campus.it
ERRATA CORRIGE: sorry :(
$ echo $PATH /System/Library/Frameworks/Python.framework/Versions/2.6/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin
-------- Original Message -------- Subject: [galaxy-dev] Some eggs are out of date...Fetch failed (Mac OS X 10.6) Date: Tue, 24 Jan 2012 22:06:42 +0100
Hi,
I'm pretty new to Galaxy, at least to this side. I'm sorry to bother you with my issue, that, I read, was quite extensively discussed previously, but even if I think to have followed correctly the instruction and further suggestions, I'm still not able to overcome the problem.
I'm trying to install a local instance of Galaxy on my MAC (OS X10.6.8) My Python version is 2.6.1 and I just installed Mercurial 2.0.2 for MacOS X 10.6.
FYI
$ python --version Python 2.6.1
--->> wrong <<---see above $ echo $PATH /Users/myName/System/Library/Frameworks/Python.framework/Versions/2.6/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
When I try to run the run.sh I get the error attached below. Can you envisage a possible reason why I'm getting this error? Sorry for the naive admission, but from the error message I'm not even capable to understand which are the "missing eggs"...
If I'd have ignored a previous post with the solution, I apologize in advance. Thank you a lot for your attention. Lu
$ sh run.sh Some eggs are out of date, attempting to fetch... Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 30, in <module> c.resolve() # Only fetch eggs required by the config File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, in resolve egg.resolve() File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 195, in resolve return self.version_conflict( e.args[0], e.args[1] ) File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 226, in version_conflict r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env, egg.fetch ) File "/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/pkg_resources.py", line 518, in resolve raise DistributionNotFound(req) # XXX put more info here pkg_resources.DistributionNotFound: numpy==1.6.0 Fetch failed.
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On Jan 24, 2012, at 4:16 PM, Lucilla Luzi wrote:
ERRATA CORRIGE: sorry :(
$ echo $PATH /System/Library/Frameworks/Python.framework/Versions/2.6/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin
-------- Original Message -------- Subject: [galaxy-dev] Some eggs are out of date...Fetch failed (Mac OS X 10.6) Date: Tue, 24 Jan 2012 22:06:42 +0100
Hi,
I'm pretty new to Galaxy, at least to this side. I'm sorry to bother you with my issue, that, I read, was quite extensively discussed previously, but even if I think to have followed correctly the instruction and further suggestions, I'm still not able to overcome the problem.
I'm trying to install a local instance of Galaxy on my MAC (OS X10.6.8) My Python version is 2.6.1 and I just installed Mercurial 2.0.2 for MacOS X 10.6.
FYI
$ python --version Python 2.6.1
--->> wrong <<---see above $ echo $PATH /Users/myName/System/Library/Frameworks/Python.framework/Versions/2.6/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
When I try to run the run.sh I get the error attached below. Can you envisage a possible reason why I'm getting this error? Sorry for the naive admission, but from the error message I'm not even capable to understand which are the "missing eggs"...
If I'd have ignored a previous post with the solution, I apologize in advance. Thank you a lot for your attention.
Hi Lu,
Could you provide the output of the following?:
% python ./scripts/get_platforms.py
Thanks, --nate
Lu
$ sh run.sh Some eggs are out of date, attempting to fetch... Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 30, in <module> c.resolve() # Only fetch eggs required by the config File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, in resolve egg.resolve() File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 195, in resolve return self.version_conflict( e.args[0], e.args[1] ) File "/Users/myName/My_programs/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 226, in version_conflict r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env, egg.fetch ) File "/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/pkg_resources.py", line 518, in resolve raise DistributionNotFound(req) # XXX put more info here pkg_resources.DistributionNotFound: numpy==1.6.0 Fetch failed.
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-
Lucilla Luzi -
Nate Coraor