Hello Nate

Thanks for looking into this so quickly - I've manually applied the patch in your PR for toolshed.yml.sample and that works perfectly, thanks!

Re picking up older .ini config files for a toolshed instance: what I was doing was spinning up a completely new pair of Galaxy and toolshed instances on my local machine, just for testing purposes. So in this case there was no pre-existing .ini files to be picked up.

Hope that makes sense - thanks again for your help, and the patch.

Best wishes

Peter

-- Peter Briggs peter.briggs@manchester.ac.uk Bioinformatics Core Facility University of Manchester B.1083 Michael Smith Bldg Tel: (0161) 2751482

________________________________ From: Nate Coraor [nate@bx.psu.edu] Sent: Wednesday, February 14, 2018 4:19 PM To: Peter Briggs Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Running toolshed on localhost is broken in release_17.09?

Hi Peter,

This might be due to the switch from Paste to uWSGI for reports and tool shed applications in 17.09. I do see that when using the 17.09 default configuration (uWSGI with config/tool_shed.yml.sample), the static content is not configured to be served, so I submitted a fix for that here:

https://github.com/galaxyproject/galaxy/pull/5534

However, if you have an existing tool_shed.ini, run_tool_shed.sh is supposed to continue to use Paste, and since run_tool_shed.sh (presumably) decided to start with uWSGI instead of Paste, it did not find your tool_shed.ini. Is it located somewhere other than config/tool_shed.ini?

--nate

On Wed, Feb 14, 2018 at 9:34 AM, Peter Briggs <peter.briggs@manchester.ac.ukmailto:peter.briggs@manchester.ac.uk> wrote: Hello

I'm trying to run a toolshed instance on localhost to test some local tool changes - this works okay in release_17.05, but setting one up using release_17.09 appears to be broken out of the box, at least for me.

In release_17.09, after configuration connecting to http://127.0.0.1:9009/ brings up a version which isn't usable - the styles are missing and it it's not possible to navigate, register/login etc.

Uncommenting lines like

# Serving static files (needed if running standalone) static_enabled: True

in the config/tool_shed.yml file don't seem to make any difference.

I didn't find anything in the Galaxy Github issue list about this, so has anyone else observed this behaviour? For now I've just gone back to release_17.05 for my local toolshed needs.

Thanks

Peter

-- Peter Briggs peter.briggs@manchester.ac.ukmailto:peter.briggs@manchester.ac.uk Bioinformatics Core Facility University of Manchester B.1083 Michael Smith Bldg Tel: (0161) 2751482

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