backslash in string for galaxy tool
I am creating a tool which allows you to query RDF files. However when performing a \n in the query it is replaced by Xn. Other special characters such as > are replaced by an __gt__ . How can I either allow galaxy to accept \n entries or that the backslash is replaced by something like __bs__ ? As Xn is not replaceable.
Hi Jasper, You'll find that sanitizers are what you want. https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax?highlight=%28san... Here's an example of a sanitizer permitting the pound character that I use: <param name="feature_color" type="color" label="Default feature color" value="#ff00ff"> <sanitizer> <valid initial="string.letters,string.digits"> <add value="#" /> </valid> </sanitizer> </param> Ciao, Eric On 03/10/2016 04:13 PM, Jasper Koehorst wrote:
I am creating a tool which allows you to query RDF files. However when performing a \n in the query it is replaced by Xn. Other special characters such as > are replaced by an __gt__ . How can I either allow galaxy to accept \n entries or that the backslash is replaced by something like __bs__ ? As Xn is not replaceable.
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-- Eric Rasche Programmer II Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 <tel:404-692-2048> esr@tamu.edu <mailto:esr@tamu.edu>
Indeed this combination works perfectly now: <valid initial="string.ascii_letters + string.punctuation + string.whitespace + string.digits" /> Thanks! From: Eric Rasche <esr@tamu.edu> Organization: TAMU Date: Thursday 10 March 2016 at 17:16 To: Jasper Koehorst <jasperkoehorst@gmail.com>, <galaxy-dev@lists.bx.psu.edu> Subject: Re: [galaxy-dev] backslash in string for galaxy tool Hi Jasper, You'll find that sanitizers are what you want. https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax?highlight=%28san... Here's an example of a sanitizer permitting the pound character that I use: <param name="feature_color" type="color" label="Default feature color" value="#ff00ff"> <sanitizer> <valid initial="string.letters,string.digits"> <add value="#" /> </valid> </sanitizer> </param> Ciao, Eric On 03/10/2016 04:13 PM, Jasper Koehorst wrote: I am creating a tool which allows you to query RDF files. However when performing a \n in the query it is replaced by Xn. Other special characters such as > are replaced by an __gt__ . How can I either allow galaxy to accept \n entries or that the backslash is replaced by something like __bs__ ? As Xn is not replaceable. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Eric Rasche Programmer II Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu
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Eric Rasche -
Jasper Koehorst