app_iter = self.application(environ, detect_start_response) Module paste.recursive:84 in __call__ view return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ view return self.application(environ, start_response) Module galaxy.web.framework.base:125 in __call__ view return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:182 in handle_request view body = method( trans, **kwargs ) Module galaxy.web.framework:228 in decorator view return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.admin_toolshed:894 in
Dear Galaxy team, I'm trying to install NCBI + tools on a local instance of galaxy (rep: 8.1546099212f), but I get the following error, which I do not get when trying to install other tools. Thank you for all your hard work. It's all much appreciated David Error Traceback: View as: Interactive | Text | XML (full) ⇝ HTTPError: HTTP Error 500: Internal Server Error URL: http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=1d92ebdf7e8d466c&changeset_revisions=1f546099212f Module weberror.evalexception.middleware:364 in respond view prepare_for_install view
common_install_util.get_dependencies_for_repository( trans, tool_shed_url, repo_info_dict, includes_tool_dependencies ) Module tool_shed.util.common_install_util:90 in get_dependencies_for_repository view required_repo_info_dicts = get_required_repo_info_dicts( tool_shed_url, util.listify( repo_info_dict ) ) Module tool_shed.util.common_install_util:283 in get_required_repo_info_dicts view response = urllib2.urlopen( url ) Module urllib2:126 in urlopen view return _opener.open(url, data, timeout) Module urllib2:400 in open view response = meth(req, response) Module urllib2:513 in http_response view 'http', request, response, code, msg, hdrs) Module urllib2:438 in error view return self._call_chain(*args) Module urllib2:372 in _call_chain view result = func(*args) Module urllib2:521 in http_error_default view raise HTTPError(req.get_full_url(), code, msg, hdrs, fp) HTTPError: HTTP Error 500: Internal Server Error
David, While I look into the cause of this error, could you tell me which revision of Galaxy you're running? --Dave B. On 4/11/13 12:51:03.000, David Bonsall wrote:
Dear Galaxy team,
I'm trying to install NCBI + tools on a local instance of galaxy (rep: 8.1546099212f), but I get the following error, which I do not get when trying to install other tools.
Thank you for all your hard work. It's all much appreciated
David
app_iter = self.application(environ, detect_start_response) Module paste.recursive:84 in __call__ view return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ view return self.application(environ, start_response) Module galaxy.web.framework.base:125 in __call__ view return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:182 in handle_request view body = method( trans, **kwargs ) Module galaxy.web.framework:228 in decorator view return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.admin_toolshed:894 in
Error Traceback: View as: Interactive | Text | XML (full) ⇝ HTTPError: HTTP Error 500: Internal Server Error URL: http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=1d92ebdf7e8d466c&changeset_revisions=1f546099212f Module weberror.evalexception.middleware:364 in respond view prepare_for_install view
common_install_util.get_dependencies_for_repository( trans, tool_shed_url, repo_info_dict, includes_tool_dependencies ) Module tool_shed.util.common_install_util:90 in get_dependencies_for_repository view required_repo_info_dicts = get_required_repo_info_dicts( tool_shed_url, util.listify( repo_info_dict ) ) Module tool_shed.util.common_install_util:283 in get_required_repo_info_dicts view response = urllib2.urlopen( url ) Module urllib2:126 in urlopen view return _opener.open(url, data, timeout) Module urllib2:400 in open view response = meth(req, response) Module urllib2:513 in http_response view 'http', request, response, code, msg, hdrs) Module urllib2:438 in error view return self._call_chain(*args) Module urllib2:372 in _call_chain view result = func(*args) Module urllib2:521 in http_error_default view raise HTTPError(req.get_full_url(), code, msg, hdrs, fp) HTTPError: HTTP Error 500: Internal Server Error
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
David, Thank you for reporting this error, which was due to a new tool shed feature being introduced in -central, which had not yet been wrapped in a backwards compatibility layer for -dist. As of 9440:bbb229927c68, the issue should be resolved. --Dave B. On 4/11/13 12:51:03.000, David Bonsall wrote:
Dear Galaxy team,
I'm trying to install NCBI + tools on a local instance of galaxy (rep: 8.1546099212f), but I get the following error, which I do not get when trying to install other tools.
Thank you for all your hard work. It's all much appreciated
David
app_iter = self.application(environ, detect_start_response) Module paste.recursive:84 in __call__ view return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ view return self.application(environ, start_response) Module galaxy.web.framework.base:125 in __call__ view return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:182 in handle_request view body = method( trans, **kwargs ) Module galaxy.web.framework:228 in decorator view return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.admin_toolshed:894 in
Error Traceback: View as: Interactive | Text | XML (full) ⇝ HTTPError: HTTP Error 500: Internal Server Error URL: http://127.0.0.1:8080/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=1d92ebdf7e8d466c&changeset_revisions=1f546099212f Module weberror.evalexception.middleware:364 in respond view prepare_for_install view
common_install_util.get_dependencies_for_repository( trans, tool_shed_url, repo_info_dict, includes_tool_dependencies ) Module tool_shed.util.common_install_util:90 in get_dependencies_for_repository view required_repo_info_dicts = get_required_repo_info_dicts( tool_shed_url, util.listify( repo_info_dict ) ) Module tool_shed.util.common_install_util:283 in get_required_repo_info_dicts view response = urllib2.urlopen( url ) Module urllib2:126 in urlopen view return _opener.open(url, data, timeout) Module urllib2:400 in open view response = meth(req, response) Module urllib2:513 in http_response view 'http', request, response, code, msg, hdrs) Module urllib2:438 in error view return self._call_chain(*args) Module urllib2:372 in _call_chain view result = func(*args) Module urllib2:521 in http_error_default view raise HTTPError(req.get_full_url(), code, msg, hdrs, fp) HTTPError: HTTP Error 500: Internal Server Error
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
-
Dave Bouvier -
David Bonsall