toolExample.pl script bug report
Dear Galaxy Team - We stumbled across a potential bug in the toolExample.pl script on the Galaxy Add Tool Tutorial today: http://wiki.g2.bx.psu.edu/Admin/Tools/Add%20Tool%20Tutorial In our hands, this script only works on fasta files that contain >1 sequence, and reports gc content only for the first n-1 sequences. If you could confirm this and modify if possible, this might help other users. All the best, Casey Bergman, Ph.D. Faculty of Life Sciences University of Manchester Michael Smith Building Oxford Road, M13 9PT Manchester, UK Tel: +44-(0)161-275-1713 Lab: +44-(0)161-275-5980 Fax: +44-(0)161-275-5082 skype: caseymbergman Email: casey.bergman@manchester.ac.uk Web: http://bergmanlab.smith.man.ac.uk/
Casey: Indeed. Will fix shortly. a. Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org On Jul 12, 2011, at 11:51 AM, Casey Bergman wrote:
Dear Galaxy Team -
We stumbled across a potential bug in the toolExample.pl script on the Galaxy Add Tool Tutorial today:
http://wiki.g2.bx.psu.edu/Admin/Tools/Add%20Tool%20Tutorial
In our hands, this script only works on fasta files that contain >1 sequence, and reports gc content only for the first n-1 sequences.
If you could confirm this and modify if possible, this might help other users.
All the best,
Casey Bergman, Ph.D. Faculty of Life Sciences University of Manchester Michael Smith Building Oxford Road, M13 9PT Manchester, UK
Tel: +44-(0)161-275-1713 Lab: +44-(0)161-275-5980 Fax: +44-(0)161-275-5082 skype: caseymbergman
Email: casey.bergman@manchester.ac.uk Web: http://bergmanlab.smith.man.ac.uk/
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Casey: This 'elegant' script has been fixed. Thank for poiting this out! a. Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org On Jul 12, 2011, at 11:51 AM, Casey Bergman wrote:
Dear Galaxy Team -
We stumbled across a potential bug in the toolExample.pl script on the Galaxy Add Tool Tutorial today:
http://wiki.g2.bx.psu.edu/Admin/Tools/Add%20Tool%20Tutorial
In our hands, this script only works on fasta files that contain >1 sequence, and reports gc content only for the first n-1 sequences.
If you could confirm this and modify if possible, this might help other users.
All the best,
Casey Bergman, Ph.D. Faculty of Life Sciences University of Manchester Michael Smith Building Oxford Road, M13 9PT Manchester, UK
Tel: +44-(0)161-275-1713 Lab: +44-(0)161-275-5980 Fax: +44-(0)161-275-5082 skype: caseymbergman
Email: casey.bergman@manchester.ac.uk Web: http://bergmanlab.smith.man.ac.uk/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
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Anton Nekrutenko -
Casey Bergman