Hi, I tried to install suite_mirdeep_2_0. There is an error in the dependencies of package_squid_1_9g the download link has change to http://eddylab.org/software/squid/squid.tar.gz Cheers Jochen
Hi Jochen, can you please try again I updated the recipes. Sorry for the inconvenience, Bjoern On 22.03.2016 10:24, Jochen Bick wrote:
Hi,
I tried to install suite_mirdeep_2_0. There is an error in the dependencies of package_squid_1_9g the download link has change to http://eddylab.org/software/squid/squid.tar.gz
Cheers Jochen
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Thanks Björn, looks good! Cheers Jochen On 22.03.2016 10:46, Bjoern Gruening wrote:
Hi Jochen,
can you please try again I updated the recipes.
Sorry for the inconvenience, Bjoern
On 22.03.2016 10:24, Jochen Bick wrote:
Hi,
I tried to install suite_mirdeep_2_0. There is an error in the dependencies of package_squid_1_9g the download link has change to http://eddylab.org/software/squid/squid.tar.gz
Cheers Jochen
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hej Björn, so it did work in the development galaxy but not in our production galaxy. Here I get the following error in package_randfold_2_0 after successfully installing squid version 1.9g : randfold.c:24:18: error: squid.h: No such file or directory randfold.c:26:23: error: sre_random.h: No such file or directory randfold.c: In function 'main': randfold.c:30: error: 'SQFILE' undeclared (first use in this function) randfold.c:30: error: (Each undeclared identifier is reported only once randfold.c:30: error: for each function it appears in.) randfold.c:30: error: 'sqfp' undeclared (first use in this function) randfold.c:38: error: 'SQINFO' undeclared (first use in this function) randfold.c:38: error: expected ';' before 'sqinfo' randfold.c:89: warning: incompatible implicit declaration of built-in function 'strcpy' randfold.c:96: error: 'SQFILE_FASTA' undeclared (first use in this function) randfold.c:100: error: 'sqinfo' undeclared (first use in this function) randfold.c:103: warning: incompatible implicit declaration of built-in function 'malloc' randfold.c:103: warning: incompatible implicit declaration of built-in function 'strlen' randfold.c:136: warning: incompatible implicit declaration of built-in function 'fabs' randfold.c:158: warning: incompatible implicit declaration of built-in function 'free' make: *** [randfold] Error 1 Cheer Jochen
participants (2)
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Bjoern Gruening -
Jochen Bick