9:24 a.m.
Hi,
I tried to install suite_mirdeep_2_0. There is an error in the
dependencies of package_squid_1_9g the download link has change to
http://eddylab.org/software/squid/squid.tar.gz
Cheers Jochen
9:46 a.m.
Hi Jochen,
can you please try again I updated the recipes.
Sorry for the inconvenience,
Bjoern
On 22.03.2016 10:24, Jochen Bick wrote:
Hi,
I tried to install suite_mirdeep_2_0. There is an error in the
dependencies of package_squid_1_9g the download link has change to
http://eddylab.org/software/squid/squid.tar.gz
Cheers Jochen
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10:05 a.m.
Thanks Björn, looks good!
Cheers Jochen
On 22.03.2016 10:46, Bjoern Gruening wrote:
Hi Jochen,
can you please try again I updated the recipes.
Sorry for the inconvenience,
Bjoern
On 22.03.2016 10:24, Jochen Bick wrote:
> Hi,
>
> I tried to install suite_mirdeep_2_0. There is an error in the
> dependencies of package_squid_1_9g the download link has change to
> http://eddylab.org/software/squid/squid.tar.gz
>
> Cheers Jochen
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
> http://galaxyproject.org/search/mailinglists/
10:21 a.m.
Hej Björn,
so it did work in the development galaxy but not in our production
galaxy. Here I get the following error in package_randfold_2_0 after
successfully installing squid version 1.9g :
randfold.c:24:18: error: squid.h: No such file or directory
randfold.c:26:23: error: sre_random.h: No such file or directory
randfold.c: In function 'main':
randfold.c:30: error: 'SQFILE' undeclared (first use in this function)
randfold.c:30: error: (Each undeclared identifier is reported only once
randfold.c:30: error: for each function it appears in.)
randfold.c:30: error: 'sqfp' undeclared (first use in this function)
randfold.c:38: error: 'SQINFO' undeclared (first use in this function)
randfold.c:38: error: expected ';' before 'sqinfo'
randfold.c:89: warning: incompatible implicit declaration of built-in
function 'strcpy'
randfold.c:96: error: 'SQFILE_FASTA' undeclared (first use in this function)
randfold.c:100: error: 'sqinfo' undeclared (first use in this function)
randfold.c:103: warning: incompatible implicit declaration of built-in
function 'malloc'
randfold.c:103: warning: incompatible implicit declaration of built-in
function 'strlen'
randfold.c:136: warning: incompatible implicit declaration of built-in
function 'fabs'
randfold.c:158: warning: incompatible implicit declaration of built-in
function 'free'
make: *** [randfold] Error 1
Cheer Jochen
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Jochen Bick