On Feb 6, 2012, at 1:27 PM, Zachary Charlop-Powers wrote:

Hi Galaxy Team,

I am running a small local instance of Galaxy and I've run into a database error following an upgrade to the Jan27th galaxy-dist release.

The last line when I run run.sh tells me to upgrade my database:

Exception: Your database has version '85' but this code expects version '90'. Please backup your database and then migrate the schema by running 'sh manage_db.sh upgrade'.

But when I run the manage_db.sh I run into the following errors:

$ sh manage_db.sh Traceback (most recent call last): File "./scripts/manage_db.py", line 12, in <module> from migrate.versioning.shell import main File "/home/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.5.4-py2.7.egg/migrate/versioning/shell.py", line 7, in <module> from migrate.versioning.base import * File "/home/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.5.4-py2.7.egg/migrate/versioning/base/__init__.py", line 5, in <module> from const import databases,operations File "/home/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.5.4-py2.7.egg/migrate/versioning/base/const.py", line 7, in <module> from sqlalchemy.util import OrderedDict ImportError: No module named sqlalchemy.util

The first thing that pops out is that I the sqlalchemy egg is part of py2.7 while I am using python2.6. Any suggestions on how to troubleshoot this?

Hi Zach, You could try removing your eggs/ directory and fetching them again with: % python ./scripts/fetch_eggs.py --nate

thanks, zach cp

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