Just a silly one, Are bam indexes (.bai) automagically created when a bam file is imported (either from or into a library)? If not, how can I do it? d /* Davide Cittaro Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it */
These indexes are implemented as metadata, so each dataset association (library item, history item) will have one created automatically by the framework for this datatype. On May 26, 2010, at 10:18 AM, Davide Cittaro wrote:
Just a silly one, Are bam indexes (.bai) automagically created when a bam file is imported (either from or into a library)? If not, how can I do it?
d /* Davide Cittaro
Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy
tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it */
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Hi Davide, By "imported", do you mean imported from / to a history? If so, then the Bam file has previously been uploaded, at which time the associated index was created. Importing in this case just means another pointer to the disk file is created. Greg On May 26, 2010, at 10:18 AM, Davide Cittaro wrote:
Just a silly one, Are bam indexes (.bai) automagically created when a bam file is imported (either from or into a library)? If not, how can I do it?
d /* Davide Cittaro
Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy
tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it */
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Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
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Greg Von Kuster