details: http://www.bx.psu.edu/hg/galaxy/rev/b142b116024c changeset: 3203:b142b116024c user: Anton Nekrutenko anton@bx.psu.edu date: Tue Jan 05 14:33:39 2010 -0500 description: Smart converter for SOLiD, which takes care of F3-R3 pairing problem. Requires python2.5
diffstat:
static/welcome.html | 95 +- test-data/f.fastq | 1996 +++++++++++++++++++++++++++++ test-data/fr.csf | 1001 ++++++++++++++ test-data/fr.qual | 1001 ++++++++++++++ test-data/fr_file1.fastq | 1988 ++++++++++++++++++++++++++++ test-data/fr_file2.fastq | 1988 ++++++++++++++++++++++++++++ test-data/rr.csf | 1001 ++++++++++++++ test-data/rr.qual | 1001 ++++++++++++++ tool_conf.xml.sample | 2 +- tools/fastx_toolkit/fastq_to_fasta.xml | 2 +- tools/fastx_toolkit/fastx_collapser.xml | 2 +- tools/next_gen_conversion/solid2fastq.py | 210 +++ tools/next_gen_conversion/solid2fastq.xml | 159 ++ 13 files changed, 10408 insertions(+), 38 deletions(-)
diffs (truncated from 10545 to 3000 lines):
diff -r 71928a8f9bf9 -r b142b116024c static/welcome.html --- a/static/welcome.html Tue Jan 05 10:31:32 2010 -0500 +++ b/static/welcome.html Tue Jan 05 14:33:39 2010 -0500 @@ -6,15 +6,26 @@ <meta name="generator" content="Docutils 0.3.9: http://docutils.sourceforge.net/" /> <link rel="stylesheet" href="style/base.css" type="text/css" /> <style type="text/css"> + .quickie { text-align: center; background: black; margin: 10px; } + .current-quickie { - width: 100%; - background: black; + width: 300px; + background: white; + margin: auto; } + + .current-quickie img { + padding: 15px; + border: 1px solid #ccc; + margin: auto; + background-color: white; + } + .previous { width: 100%; overflow: auto; @@ -30,42 +41,35 @@ margin-left: auto; margin-right: auto; } + </style> +<script type="text/javascript" src="http://galaxy.psu.edu/welcome_img/jquery.min.js"></script> +<script type="text/javascript" src="http://galaxy.psu.edu/welcome_img/jquery.cycle.all.2.72.js"></script> +<script type="text/javascript"> + +$(document).ready(function() { + $('.current-quickie').cycle({ + fx: 'fade', + pause: 1, + speed: 100 + }); +}); +</script> </head> +<body> +<div class="document"> +<h3 align="center">Galaxy in 2010...</h3> +<div align="center" class="current-quickie"> + <img src="http://galaxy.psu.edu/welcome_img/welcome_images.001.png" width="300" height="200" /> + <img src="http://galaxy.psu.edu/welcome_img/welcome_images.002.png" width="300" height="200" /> + <img src="http://galaxy.psu.edu/welcome_img/welcome_images.003.png" width="300" height="200" /> + <img src="http://galaxy.psu.edu/welcome_img/welcome_images.004.png" width="300" height="200" /> + <img src="http://galaxy.psu.edu/welcome_img/welcome_images.005.png" width="300" height="200" /> +</div> +<br> +<hr>
- -<body> - -<div class="document"> -<div class="infomessagelarge"> - <strong>We are hiring!</strong> - <hr> - Thanks to your support and an unprecedented level of usage, we are looking for an experienced software developer to join our team. For more information about this position, please, click <a target="_blank" href="https://www.bx.psu.edu/cgi-bin/trac.cgi/galaxy/wiki/PythonDeveloper">here</a>. -</div> -<br/> - -<div id="screencasts"> - -<h2>Introducing Galactic Quickies</h2> -<p> - Galactic quickies are <i>super-short</i> screencasts that are <i>always</i> under 5 minutes. We thought it may be a good way to spread the word about Galaxy's functionality while keeping the "annoyance factor" to the minimum. The quickies will be updated weekly. -</p> - -<div class="current-quickie"> - <table border="0" cellpadding="0" cellspacing="0" width="100%"> - <tr> - <td align="center"> - <a href="javascript:parent.show_in_overlay({url:'http://screencast.g2.bx.psu.edu/galaxy/quickie5_join/flow.html',width:640,height:500,scroll:'no'})"> - <img src="images/qk/quickie5_lrg.png" border="0"> - <br> - </a> - - </td> - </tr> - </table> -</div> - -<h3>Previous Quickies</h3> +<h3 align="center">Galaxy Quickies</h3>
<div class="previous" id="previous"> <table border="0" cellpadding="0" cellspacing="0" width="100%"> @@ -98,6 +102,27 @@ </div> </a> </td> + <td> + <a href="javascript:parent.show_in_overlay({url:'http://screencast.g2.bx.psu.edu/galaxy/quickie5_join/flow.html',width:640,height:500,scroll:'no'})"> + <div class="quickie"> + <img src="images/qk/quickie5_small.png" border="0"> + </div> + </a> + </td> + <td> + <a href="javascript:parent.show_in_overlay({url:'http://screencast.g2.bx.psu.edu/galaxy/quickie6_share/flow.html',width:640,height:500,scroll:'no'})"> + <div class="quickie"> + <img src="images/qk/quickie6_small.png" border="0"> + </div> + </a> + </td> + <td> + <a href="javascript:parent.show_in_overlay({url:'http://screencast.g2.bx.psu.edu/galaxy/quickie7_sr_beta/flow.html',width:640,height:500,scroll:'no'})"> + <div class="quickie"> + <img src="images/qk/quickie7_small.png" border="0"> + </div> + </a> + </td> </tr> </table> </div> diff -r 71928a8f9bf9 -r b142b116024c 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galaxy-dev@lists.galaxyproject.org
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Greg Von Kuster